Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04044 and BL01152

See Amino acid alignment / Visit BSNT_04044 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_04044___safA.1.5803.seq
#    -bsequence dna-align/BL01152___safA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04044___safA-BL01152___safA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04044___safA-BL01152___safA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04044___safA
# 2: BL01152___safA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1260
# Identity:     739/1260 (58.7%)
# Similarity:   739/1260 (58.7%)
# Gaps:         303/1260 (24.0%)
# Score: 1930.5
# 
#
#=======================================

BSNT_04044___      1 TTGAAAATCCATATCGTTCAAAAAGGTGATTCGCTCTGG--AAAATAGCT     48
                     ||||||||.|||||.||.|||||.||.||||  ||||||  |||||.||.
BL01152___saf      1 TTGAAAATTCATATTGTCCAAAAGGGCGATT--CTCTGGAAAAAATCGCG     48

BSNT_04044___     49 GAAAAGTACGGAGTCGATGTTGAGGAAGTGAAAAAACTCAATACACAGCT     98
                     ||||..||.|.|||.||..||||.|||.|||||||.||.|||.|.|||||
BL01152___saf     49 GAAAGATATGAAGTGGACTTTGAAGAACTGAAAAAGCTGAATTCGCAGCT     98

BSNT_04044___     99 TAGCAATCCAGACTTAATCATGCCTGGAATGAAAATAAAAGTGCCGTCAG    148
                     .||||||||||||||.||||||||.||.||||||||.|||||.|||||||
BL01152___saf     99 GAGCAATCCAGACTTGATCATGCCGGGCATGAAAATCAAAGTACCGTCAG    148

BSNT_04044___    149 AAGGAGTCCCGGTCAGAAAAG-AGCCAAAAGCGGGCAAAAGTCCTGCGGC    197
                     ..|||||.|||||||.||||| ||  ||.|||  .|||.|    ||||..
BL01152___saf    149 GGGGAGTGCCGGTCAAAAAAGAAG--AACAGC--TCAATA----TGCGAA    190

BSNT_04044___    198 CGGGAGT---GTGA----AGCAAGAACATCCATATGCGAAAGAGAAGCCT    240
                     .||.|.|   |..|    ||||.||||||||||.|||.|||||.|||||.
BL01152___saf    191 AGGAATTACCGAAAAAACAGCAGGAACATCCATTTGCAAAAGAAAAGCCG    240

BSNT_04044___    241 AAATCCGTTGTCGATGTAGAAGACACAAAGCCGAAAGAAAAGAAGTCCAT    290
                     |||..|....|.|||||.|||||.|.|||.||||||||||||...||..|
BL01152___saf    241 AAAAGCAAGCTTGATGTTGAAGATATAAAACCGAAAGAAAAGCCTTCGGT    290

BSNT_04044___    291 GCCGTATGTCCCGCCGATGCCTAATTTGCA--GGAAAAT---GTGTACCC    335
                     .||.|||||.|||||..|.||.||    ||  |||.|||   || |..||
BL01152___saf    291 TCCTTATGTTCCGCCTGTCCCGAA----CATCGGACAATCAAGT-TTGCC    335

BSNT_04044___    336 TGAAGCTG--ATGTGAACGATTATTATGATATGAAA--------CAGCTT    375
                     |||||..|  ||.|   |||  ||| || |||.|||        ||||||
BL01152___saf    336 TGAAGGCGACATTT---CGA--ATT-TG-TATCAAAGCGTCAATCAGCTT    378

BSNT_04044___    376 TTCCAGCCTTGGT-CG--CCTCCTAAACCGGAGGAGCCGAAAAAACATCA    422
                     ...|||||   || ||  |||||.|||||..|.|         |||||||
BL01152___saf    379 CATCAGCC---GTACGTACCTCCAAAACCTTATG---------AACATCA    416

BSNT_04044___    423 TGACGGAAATATGGATC--ATATGTATCAT--ATGCAAGACCAATTTCCA    468
                     .||  ||||   ||..|  |.||||||.||  |||   |||.|||     
BL01152___saf    417 AGA--GAAA---GGCCCCAACATGTATAATCCATG---GACAAAT-----    453

BSNT_04044___    469 CAACAGGAGGCTATGAGTA--ATATGGAAAATGCAAATTATCCGAATATG    516
                           ||||  |.||..|  ||||||||||||..||||||||||||.|.
BL01152___saf    454 ------GAGG--AGGAAAACCATATGGAAAATGTCAATTATCCGAATGTT    495

BSNT_04044___    517 CCTAATATGCCAAAGGCGCCAGAGGTAGGCGGTGTAGAA---GAGGAAAA    563
                     ||      ||   ||.|||||.|.||   |||||.||.|   ||.|||||
BL01152___saf    496 CC------GC---AGCCGCCAAATGT---CGGTGCAGCAGGTGATGAAAA    533

BSNT_04044___    564 CGTTCATCA----CACAG--TTCCGAATAT-GCCGATGCCGGCTGT--TC    604
                        |.|.||    |||.|  |.||||||.| ||.|..||.||.|.|  ||
BL01152___saf    534 ---TAAGCAGTTTCACGGCATGCCGAATGTAGCTGCAGCGGGATATCATC    580

BSNT_04044___    605 AGCCTTATTATCATTATCCGGCTCATTTCGTACCGTGTCCGGTG------    648
                     |.|.|...||||.|||||||      ||| ||.|.||...|.||      
BL01152___saf    581 ACCATCCATATCCTTATCCG------TTC-TATCCTGGAGGCTGCTGGAT    623

BSNT_04044___    649 -CCTGTTTCGCCAATTTTTCCAGGATCAGGATTATGCTATCCGTACTATC    697
                      ||||||||.||..|..|.||.|||||.|||||.|||.||||.|..||||
BL01152___saf    624 TCCTGTTTCACCGGTGCTGCCTGGATCGGGATTGTGCCATCCTTGGTATC    673

BSNT_04044___    698 CGGCACAAGCTTATCCAATGCATCCGATGCATGGATACCAGCCAGGCTTT    747
                        ||.|..||..||.|||||.|...||||||      |||||..|||.|
BL01152___saf    674 ---CATATCCTGCTCAAATGCCTTATATGCAT------CAGCCTAGCTAT    714

BSNT_04044___    748 GTATCGC---CTCAGTATGACCCGGGTTATGAAAACCAGCAT----CATG    790
                     |||||.|   ||.|.||||||   |.|.||||    ||.|||    ||||
BL01152___saf    715 GTATCTCCTGCTGAATATGAC---GATGATGA----CAACATGGGGCATG    757

BSNT_04044___    791 AAAA---CAGCCATCACGGA---CATTACGGTTCATACGGTG--CGCCGC    832
                     |.||   |.|.|||||||||   |||.|    |||..||.||  .|||  
BL01152___saf    758 ACAATGCCGGTCATCACGGATACCATCA----TCAGCCGATGACTGCC--    801

BSNT_04044___    833 AATACGCATCTCCGGCTTATGGATCTCCGTATGGACATATGCCGTATGGC    882
                                |||||.||||   |.||.||   .||   |||||   .|
BL01152___saf    802 -----------CCGGCATATG---CGCCTTA---CCA---GCCGT---TC    828

BSNT_04044___    883 CC-----TTATTACGGCACTCCCCAA------GTAATG--GGAGCATACC    919
                     ||     ||      |||| |.||||      ||.|.|  ||.|      
BL01152___saf    829 CCGGGATTT------GCAC-CGCCAAACGTCGGTCACGCCGGGG------    865

BSNT_04044___    920 AGCCTGCTGCGGCTCATGGTTACATGCCATACAAAGATCATGACGACTGC    969
                     |.|||..|..|||.||.||            |||||   |.||.||||||
BL01152___saf    866 ACCCTAATATGGCACACGG------------CAAAG---AAGATGACTGC    900

BSNT_04044___    970 GGCTGTGACGGTGATCATCAGCCATATTTCTCTGCGCCTGGCC-ATTCGG   1018
                     ||.||   |||                        |||.|||| ||||  
BL01152___saf    901 GGGTG---CGG------------------------GCCGGGCCAATTC--    921

BSNT_04044___   1019 GAATGGGAGCTTAT--------GGAAGCCCTAATATGCCATATGGCACAG   1060
                       ..|||||.||.|        ||           .||||||||| ||||
BL01152___saf    922 --CCGGGAGGTTTTCCAGGTGCGG-----------CGCCATATGG-ACAG    957

BSNT_04044___   1061 CTAACCCAAATCCAAAC-CCATATTCGGCA-----GGAGTTTCTATGCCA   1104
                     .|..|.|||||...|.| ||.||  |||.|     |||     ||.|   
BL01152___saf    958 ATGCCGCAAATGGGAGCTCCGTA--CGGTATGGGGGGA-----TACG---    997

BSNT_04044___   1105 ATGACGAATCAGCCTTCTGTAAACCAAATGTTTGGCCGGCCGGAAGAAGA   1154
                       |||  |.||||||.|.|.....||.||||||..|.|.||||||||.||
BL01152___saf    998 --GAC--AGCAGCCTGCAGGGGGACAGATGTTTAACAGACCGGAAGATGA   1043

BSNT_04044___   1155 AAATGAGTGA   1164
                     ..|.||.|||
BL01152___saf   1044 TGAAGACTGA   1053


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