Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05696 and BL01173

See Amino acid alignment / Visit BSNT_05696 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:48
# Commandline: needle
#    -asequence dna-align/BSNT_05696___narH.1.5803.seq
#    -bsequence dna-align/BL01173___narH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05696___narH-BL01173___narH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05696___narH-BL01173___narH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05696___narH
# 2: BL01173___narH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1499
# Identity:    1183/1499 (78.9%)
# Similarity:  1183/1499 (78.9%)
# Gaps:          64/1499 ( 4.3%)
# Score: 4670.5
# 
#
#=======================================

BSNT_05696___      1 TTGAAGATTAAAGCGCAAATCGGTATGGTCATGAACTTGGATAAATGCAT     50
                     |||||||||||||||||||||||.|||||.||||||.|.||.||||||||
BL01173___nar      1 TTGAAGATTAAAGCGCAAATCGGAATGGTAATGAACCTTGACAAATGCAT     50

BSNT_05696___     51 CGGCTGCCACACGTGCAGCGTCACCTGCAAAAACACGTGGACAAACCGTT    100
                     |||||||||.||.|||||||||||.|||||||||||.|||||||||||||
BL01173___nar     51 CGGCTGCCATACATGCAGCGTCACATGCAAAAACACTTGGACAAACCGTT    100

BSNT_05696___    101 CCGGTGCGGAATATATGTACTTCAATAATGTAGAAACAAAGCCGGGCATC    150
                     |||||||.|||||||||||||||||.||.||.||||||||.|||||||||
BL01173___nar    101 CCGGTGCAGAATATATGTACTTCAACAACGTCGAAACAAAACCGGGCATC    150

BSNT_05696___    151 GGCTACCCGAAGCAATGGGAGGACCAGGACAAATATAAAGGCGGCTGGAC    200
                     ||||||||.||.|||||||||.|||||||.|||||.||||||||||||..
BL01173___nar    151 GGCTACCCTAAACAATGGGAGAACCAGGATAAATACAAAGGCGGCTGGGA    200

BSNT_05696___    201 ATTGAAAAAAGGAAAGCTCGAGCTGAAATCGGGCTCGAAAACCAATCGGC    250
                     ..||||||||||.||||||.||||.|||||.|||.|.|||.|.|..||||
BL01173___nar    201 GCTGAAAAAAGGCAAGCTCCAGCTTAAATCAGGCGCCAAAGCAACGCGGC    250

BSNT_05696___    251 TTGCAGGCCTT--TTCTATAATCCGAATCAGCCGTCGATTGATGATTACT    298
                     |  ||.|..||  |||||.||.|||.||||||||.||||.|||||.||||
BL01173___nar    251 T--CATGAATTTATTCTACAACCCGTATCAGCCGACGATCGATGACTACT    298

BSNT_05696___    299 ATGAACCCTGGAACTATGATTATGAAACATTAACGAACAGCCCGCAGAAA    348
                     |||||||.||||||||||||||||||||..|.||.|||||.|||.|||||
BL01173___nar    299 ATGAACCTTGGAACTATGATTATGAAACGCTGACAAACAGTCCGGAGAAA    348

BSNT_05696___    349 AAACACCAGCCGGTTGCACGCCCGAAATCGTCCTTGACGGGGGATTTCAT    398
                     |||||.|||||.||||||.|.|||||.||.|||.|.|||||.||.|||||
BL01173___nar    349 AAACATCAGCCTGTTGCAAGGCCGAAGTCTTCCATTACGGGAGACTTCAT    398

BSNT_05696___    399 GAATATCGAATGGGGACCGAACTGGGAGGATGATCTCGCGGGCGGCCACA    448
                     |||..|.||||||||.|||||||||||.||.|||||.||.||||||||||
BL01173___nar    399 GAACCTTGAATGGGGTCCGAACTGGGAAGACGATCTTGCCGGCGGCCACA    448

BSNT_05696___    449 TAACGGGACTTGAAGATCCCAACGTACAAAAGATGGAGGAATCGATCAAA    498
                     |.||.||.||..|||||||.|||||..||||.|||||.|||||.||||||
BL01173___nar    449 TTACAGGCCTCCAAGATCCAAACGTCAAAAAAATGGAAGAATCCATCAAA    498

BSNT_05696___    499 ACAGAATTCGATGAGGTTTTTATGATGTATTTGCCCCGTATTTGCGAGCA    548
                     ||.|||||.||.||.||.||||||||||||.||||..|.||.|||||.||
BL01173___nar    499 ACCGAATTTGAAGACGTCTTTATGATGTATCTGCCAAGGATATGCGAACA    548

BSNT_05696___    549 CTGCATCAACCCGGCGTGCGTCTCATCCTGTCCATCCGGCGCCATGTACA    598
                     |||||||||.||..|.||||||||.||||||||.||.||.||.|||||||
BL01173___nar    549 CTGCATCAATCCTTCCTGCGTCTCCTCCTGTCCGTCGGGAGCGATGTACA    598

BSNT_05696___    599 AACGCGAGGAGGACGGCATTGTGCTTGTGGATCAAAACGCATGCCGTTCA    648
                     ||||||||||.||||||||.||.||.||.||||||||.||.|||||.|||
BL01173___nar    599 AACGCGAGGAAGACGGCATCGTTCTCGTCGATCAAAATGCGTGCCGCTCA    648

BSNT_05696___    649 TGGAGATATTGCGTCTCATCCTGTCCTTATAAAAAAGTCTATTTTAACTG    698
                     ||||||.|.||.||.|||||.|||||||||||||||||.|||||.|||||
BL01173___nar    649 TGGAGACACTGTGTATCATCATGTCCTTATAAAAAAGTGTATTTCAACTG    698

BSNT_05696___    699 GCAAACGAACAAAGCGGAAAAATGCACACTCTGCTTTCCGCGTTTGGAGG    748
                     |||.||.|||||.|||||||||||||||.|.|||||.||.|||.|.||.|
BL01173___nar    699 GCAGACTAACAAGGCGGAAAAATGCACATTGTGCTTCCCTCGTCTTGAAG    748

BSNT_05696___    749 CGGGACTGCCAACCATCTGCTCTGAGACGTGTGTTGGCAGAATCCGCTAC    798
                     |.||||||||.||.||||||||||||||.||.||.||||||||||||||.
BL01173___nar    749 CAGGACTGCCGACAATCTGCTCTGAGACATGCGTCGGCAGAATCCGCTAT    798

BSNT_05696___    799 CTCGGCGTCATGCTGTATGACGCGGACAAAGTGGAGGAAGCGGCATCTGT    848
                     |||||.||||||||.||||||||.||.|||||.||.||||||||.||.|.
BL01173___nar    799 CTCGGAGTCATGCTTTATGACGCAGAAAAAGTCGAAGAAGCGGCTTCAGC    848

BSNT_05696___    849 TGAAAATGAAAAGGATCTCTACCATTCCCAATTGGACGTTTTTCTTGATC    898
                     .|||||||||||.|||.|.||.||.||.||..||||..||||.|||||.|
BL01173___nar    849 CGAAAATGAAAAAGATTTGTATCACTCACAGCTGGAGATTTTCCTTGACC    898

BSNT_05696___    899 CGAATGATCCTGAGGTTGCCAAGCTG--GCAAAAGAACAAGGCATTCCGG    946
                     ||||||||||.|..|||||  ||..|  |||||||..||||||||||| |
BL01173___nar    899 CGAATGATCCCGCTGTTGC--AGAAGAAGCAAAAGCTCAAGGCATTCC-G    945

BSNT_05696___    947 CT-GAATGGATAGAGGCTGCGCAGCAATCGCCGATTTATAAAATGATCAT    995
                     || ||.|||||.||.||.|||||..||||.|||||.||.|||||||||||
BL01173___nar    946 CTGGAGTGGATTGAAGCAGCGCAAAAATCTCCGATCTACAAAATGATCAT    995

BSNT_05696___    996 TGACTGGAAGATTGCGCTGCCGCTTCATCCAGAGTACCGCACCCTGCCAA   1045
                     .||.|||||.||.||.||||||||.|||||.||.|||||.||..||||.|
BL01173___nar    996 CGATTGGAAAATCGCTCTGCCGCTGCATCCTGAATACCGGACATTGCCGA   1045

BSNT_05696___   1046 TGGTGTGGTACATTCCGCCGCTCAGCCCGATTATGAATCTCTTTGAAGGA   1095
                     ||||.|||||.|||||.||||||||.||||||||||||.|.|||||||||
BL01173___nar   1046 TGGTATGGTATATTCCTCCGCTCAGTCCGATTATGAATATGTTTGAAGGA   1095

BSNT_05696___   1096 AAAGG--CAGCCGGCAATCCGCGGAAGATATTTTTCCGGCTATCGACCAA   1143
                     |||||  |||||  |||||.||.||||||||.||.||.|||||.||..||
BL01173___nar   1096 AAAGGAACAGCC--CAATCAGCTGAAGATATCTTCCCTGCTATTGATGAA   1143

BSNT_05696___   1144 ATGAGAATCCCGATAGATTATTTGGCGCA----GCTGTTAACAGCCGGTG   1189
                     |||.|.||.|||||.||.|||||||| ||    ||||   ||.|||||||
BL01173___nar   1144 ATGCGGATTCCGATCGAATATTTGGC-CAATTTGCTG---ACTGCCGGTG   1189

BSNT_05696___   1190 ATACGGATCATATTCGGTCAACGTTGAAGAAAATGTCTGTCATGCGCCAG   1239
                     ||||..|.||||||.|..|.||.||.||||||||||||||.||||    |
BL01173___nar   1190 ATACACACCATATTAGAACGACATTAAAGAAAATGTCTGTGATGC----G   1235

BSNT_05696___   1240 TAT----ATGAGAGCGATCCAGACGAATAAATCA-ATCGACCCGGAACTG   1284
                     |||    |||.|.||||.|||.|||||.||| || |||||..|....|||
BL01173___nar   1236 TATGCACATGCGGGCGACCCAAACGAACAAA-CAGATCGATTCATCTCTG   1284

BSNT_05696___   1285 ATCTCCAG-TGTCGGCTTAACAGAACAGCAAATTGAAGATATGTATCGGC   1333
                     || ||.|| |..|||.||.||.|||.||||.||||||||.|||||.||.|
BL01173___nar   1285 AT-TCAAGATACCGGATTGACTGAAGAGCAGATTGAAGACATGTACCGTC   1333

BSNT_05696___   1334 TGCTTGCGATTGCCAAATATGATGACCGCTTTGTGAT-------ACCGAG   1376
                     |||||||.||.||||||||.||||||||.||.||.||       |||   
BL01173___nar   1334 TGCTTGCAATCGCCAAATACGATGACCGGTTCGTCATTCCTCAAACC---   1380

BSNT_05696___   1377 CAGTCATCGAGAAGAAGTTTCAGATTTAT--ATGCTGAACAAGGGAGCTG   1424
                         |||||.||||||||..|.|||.|||  |||  ||||||||.|||||
BL01173___nar   1381 ----CATCGCGAAGAAGTCGCGGATCTATACATG--GAACAAGGAAGCTG   1424

BSNT_05696___   1425 CGGCTTATCATTTTCAGGCGGCCCCGGCTCCTGTTTCTAA---------   1464
                     |||.|||||.|||.|.||.||.||||||||   ||.|.||         
BL01173___nar   1425 CGGATTATCGTTTGCCGGAGGACCCGGCTC---TTGCCAAAACATATAA   1470


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