Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01082 and BL01190

See Amino acid alignment / Visit BSNT_01082 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence dna-align/BSNT_01082___cotA.1.5803.seq
#    -bsequence dna-align/BL01190___cotA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01082___cotA-BL01190___cotA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01082___cotA-BL01190___cotA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01082___cotA
# 2: BL01190___cotA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1672
# Identity:    1088/1672 (65.1%)
# Similarity:  1088/1672 (65.1%)
# Gaps:         260/1672 (15.6%)
# Score: 3235.0
# 
#
#=======================================

BSNT_01082___      1 ATGACACTTGAAAAATTTGTGGA--TGCTCTCCCAATCC-CAGAT-----     42
                     ||||.||||||||||||.||.||  .|||| ||||.||| ||..|     
BL01190___cot      1 ATGAAACTTGAAAAATTCGTTGACCGGCTC-CCCATTCCGCAAGTGCTTC     49

BSNT_01082___     43 -ACACTAAAGCCAGTACAGCAATCAAAAGAAAAAACATACTACGAAGTCA     91
                      ||.|.|||||.|       ||.| ||.||||..||.||.||.|||||||
BL01190___cot     50 AACCCCAAAGCAA-------AAGC-AAGGAAATGACCTATTATGAAGTCA     91

BSNT_01082___     92 CCATGGAAGAA-TGCACTCATCAGCTCCATCGCGATCTCCCTCCAACCCG    140
                     |||||.||||| |.|| .||.|||||.||.||||||||.||.||.||.||
BL01190___cot     92 CCATGAAAGAATTTCA-GCAGCAGCTTCACCGCGATCTGCCGCCGACTCG    140

BSNT_01082___    141 CCTGTGGGGATACAACGGCTTATTTCCGGGGCCGACCATTGAGGTTAAAA    190
                     .||||..|||||.|||||..|.|.|||.||.||.|||.|.||.||..|.|
BL01190___cot    141 GCTGTTTGGATATAACGGAGTTTATCCCGGCCCTACCTTCGAAGTGCAGA    190

BSNT_01082___    191 GAAATGAAAACGTATATGTAAAATGGATGAATAACCTTCC---TTCCACA    237
                     .|.|.|||||.||....||.||.|||.|.|||||.|||||   |..|   
BL01190___cot    191 AACACGAAAAAGTCGCAGTCAAGTGGTTAAATAAGCTTCCGGATCGC---    237

BSNT_01082___    238 CATTTCCTTCCGATTGATCACACCATTCATCACAGTGACAGCCAGCATGA    287
                     |||||.||.||..|.||.||.||   .|.||||..||||.||||.||.||
BL01190___cot    238 CATTTTCTCCCCGTCGACCATAC---GCTTCACGATGACGGCCATCACGA    284

BSNT_01082___    288 AGAGCCCGAGGTAAAGACTGTTGTTCATTTACACGGCGGC-GTCACGCCA    336
                     |   |..||.||.|||||.||.||||||||.|||||.||| || |||||.
BL01190___cot    285 A---CATGAAGTGAAGACGGTCGTTCATTTGCACGGAGGCTGT-ACGCCT    330

BSNT_01082___    337 GATGACAGTGACGGGTATCCGGAGGCTTGGTTTTCCAAAGACTT---TGA    383
                     |.||||||.|||||.|||||.||||||||||...|.||||||||   || 
BL01190___cot    331 GCTGACAGCGACGGATATCCTGAGGCTTGGTACACAAAAGACTTCCATG-    379

BSNT_01082___    384 ACAAACAGGACCTTATTTCAAAAGAGAGGTTTATCATTATCCAAACCAGC    433
                      |||| |||.||||..||..||||.|||||.|||.|.|||||.||..|||
BL01190___cot    380 -CAAA-AGGCCCTTTCTTTGAAAGGGAGGTGTATGAATATCCGAATGAGC    427

BSNT_01082___    434 AGCGCGGGGCTA----TATTGTGGTATCACGATCACGCCATGGCGCTCAC    479
                     ||   |..||||    |.|| ||||||||.||.||.||.|||||..||||
BL01190___cot    428 AG---GATGCTACAGCTCTT-TGGTATCATGACCATGCAATGGCCATCAC    473

BSNT_01082___    480 CAGGCTAAATGTCTATGCCGGACTTGTCGGTGCTTATA--TCATTCATGA    527
                     .|||||.|||||.|||||.||.|||||||||  |||||  |.||||..||
BL01190___cot    474 AAGGCTGAATGTATATGCGGGGCTTGTCGGT--TTATATTTTATTCGCGA    521

BSNT_01082___    528 CCCAAAGGAAAAACGCTTAA---AAC-TGCCTTCAGA----CGAATACGA    569
                     |   |.||||.|.|| ||.|   ||| ||||    ||    .|||||.||
BL01190___cot    522 C---AGGGAAGAGCG-TTCATTGAACTTGCC----GAAGGGAGAATATGA    563

BSNT_01082___    570 TGTGCCGCTTCTTATCACAGACCGCACGATCA--------ATGAGGACGG    611
                     ..|.||||||.|.||        .||.|||.|        ||||.||.||
BL01190___cot    564 AATCCCGCTTTTGAT--------TCAGGATAAATCATTTCATGAAGATGG    605

BSNT_01082___    612 TTCTTTGTTTTATCCAAGC-GCA-CCGGAAAACCCTTCTCCGTCACTGCC    659
                     |||.|||||||||||  || ||| ||.||.||||||||.|||...||.||
BL01190___cot    606 TTCATTGTTTTATCC--GCGGCAGCCTGACAACCCTTCGCCGGATCTTCC    653

BSNT_01082___    660 TAATCCTTCAATCGTTCCGGCTTTTTGCGGAGAAACCATACTCGTCAACG    709
                     ..|.||.||.||.|||||||||||||||||.||.|||||..|.|||||||
BL01190___cot    654 GGACCCGTCGATTGTTCCGGCTTTTTGCGGTGATACCATTTTAGTCAACG    703

BSNT_01082___    710 GGAAGGTATGGCCATACTTGGAAGTCGAGCCAAGGAAATACCGATTCCGT    759
                     |.|||||||||||.|.|...|||.|.||.||..|.||||||||.||.||.
BL01190___cot    704 GCAAGGTATGGCCTTTCGCTGAACTGGAACCCCGAAAATACCGTTTTCGG    753

BSNT_01082___    760 GTCATCAACGCCTCCAATACAAGAACCTATAACCTGTCACTCGATAATGG    809
                     .|..|.||||||||||||||.||||.||.|.|.||||...|||||.|||.
BL01190___cot    754 ATACTGAACGCCTCCAATACGAGAATCTTTGAGCTGTATTTCGATCATGA    803

BSNT_01082___    810 CGGAGAGTTTAT---------TCAGATTGGTTCAGATGGAGGGCTCCTGC    850
                     |         ||         |||.||.||..|.||.||.||.||.||||
BL01190___cot    804 C---------ATCACATGTCATCAAATCGGCACGGACGGCGGTCTTCTGC    844

BSNT_01082___    851 CGCGAT-CTGTTAAACTGAAT----------TCTTTCAGCCTTGCGCCTG    889
                     .|| || |.||.|||.|.|||          ||          |||||.|
BL01190___cot    845 AGC-ATCCGGTCAAAGTCAATGAACTGGTGATC----------GCGCCGG    883

BSNT_01082___    890 CTGAACGTTATGATATCATCATTGA--CTTCAC-AGCATATGAAGGAGAA    936
                     |||||.|.|..|||||||||.||||  .||||| ||||   ||||||.||
BL01190___cot    884 CTGAAAGGTGCGATATCATCGTTGATTTTTCACGAGCA---GAAGGAAAA    930

BSNT_01082___    937 TC---GATCATTTTGGCAAACAGCGCG----GGCTGCGGCGG---TGACG    976
                     .|   || ||.|   |.|||.|   ||    |||||||||||   .||||
BL01190___cot    931 ACCGTGA-CACT---GAAAAAA---CGGATCGGCTGCGGCGGACAAGACG    973

BSNT_01082___    977 TCA-ATCCTGAAACAGATGCGAATATCATGCAATTCAGAGTCACAAAACC   1025
                      || ||||.||.||.|||||..|.||||||||||||.|..||.|||||||
BL01190___cot    974 -CAGATCCCGATACTGATGCCGACATCATGCAATTCCGCATCTCAAAACC   1022

BSNT_01082___   1026 ATTGGCACAAAAAGA--------------CGAAA-----GCAGAAAGCCG   1056
                     .|||...||||||||              |||.|     | ||||||   
BL01190___cot   1023 TTTGAAGCAAAAAGATACAAGTTCATTGCCGAGAATATTG-AGAAAG---   1068

BSNT_01082___   1057 AAGTACCTCGCCTCATACCCTTCGGTACAGCATGA---AAG---AATACA   1100
                             |||| |||    ||   |||.|.| ||   |||   |||.| 
BL01190___cot   1069 --------CGCC-CAT----TT---TACCGGA-GACACAAGATCAATGC-   1100

BSNT_01082___   1101 AAACATCAGAACGTTAAAACTGGCA---GGCAC--CCAG--GACGAATAC   1143
                        |.||||      |||.|||.||   |||.|  || |  |||.||||.
BL01190___cot   1101 ---CCTCAG------AAATCTGTCATTGGGCGCGGCC-GTTGACCAATAT   1140

BSNT_01082___   1144 GGCAGACCCGTCCTTCTGCTT---AATAACA-AACGCTGGCACGATCCCG   1189
                     ||.|||||.|   ||||||||   ||.|||| ||.| |||||.||.||.|
BL01190___cot   1141 GGAAGACCTG---TTCTGCTTTTAAACAACACAAAG-TGGCATGAACCGG   1186

BSNT_01082___   1190 TCACAGAAGCACCAAAAGTCGGCACAACTGAAATATGGTCCATTATCAA-   1238
                     |.||.|||.||||...|.||||||..|||||.||.|||||.||.||||| 
BL01190___cot   1187 TAACCGAAACACCCGCACTCGGCAGCACTGAGATCTGGTCGATCATCAAT   1236

BSNT_01082___   1239 -CCCGACACGCGGAACACATCCGATCCACCTGCATCTAGTCTCCTTCCGT   1287
                      ||.||...|||  |..|||||||||||..|.|||||.|     |||..|
BL01190___cot   1237 GCCGGAAGGGCG--ATCCATCCGATCCATTTACATCTTG-----TTCAAT   1279

BSNT_01082___   1288 GTAT-----TAGACCGGCGGCCGTTTGATATCGCCCGTTATCAAGAAAGC   1332
                     .|||     |.||||..||||||||||||||||..||.|||||.||||.|
BL01190___cot   1280 TTATGATTCTCGACCACCGGCCGTTTGATATCGAGCGGTATCAGGAAAAC   1329

BSNT_01082___   1333 GGGGAA-TTGTCCTATACCGGTCCGGCTGTCCCGCCGCCGCCAAGTGAAA   1381
                     ||.||| |||| .|.||||||||||||.||.||.|||.|.||.|.|||||
BL01190___cot   1330 GGAGAACTTGT-TTTTACCGGTCCGGCAGTTCCTCCGGCACCGAATGAAA   1378

BSNT_01082___   1382 A-GGGCTGGAAAGACACCATTCAAGCGCATGCAGGTGAAGTCCTGAGAAT   1430
                     | ||||| ||||||||||.|..|||..|...|.|||..|||     ||  
BL01190___cot   1379 AGGGGCT-GAAAGACACCGTCAAAGTACCCCCGGGTTCAGT-----GA--   1420

BSNT_01082___   1431 CGCG-------GCGACATTCGGTCCGTACAGCGGACGATACGTATGGCAT   1473
                     ||||       ||.||.||.|..|||||||||||..||||.||.|||||.
BL01190___cot   1421 CGCGCATTATCGCCACCTTTGCGCCGTACAGCGGCAGATATGTTTGGCAC   1470

BSNT_01082___   1474 TGCCATATTCTAGAGCATGAAGACTATGACATGATGAGACCGATGGATAT   1523
                     |||||.||.||.|||||.|||||.||.||.||||||.|.||..|.||..|
BL01190___cot   1471 TGCCACATCCTTGAGCACGAAGATTACGATATGATGCGCCCTCTTGAAGT   1520

BSNT_01082___   1524 AACAGA---TCCCCATAAATAA   1542
                     .|||||   ||..|||.|||||
BL01190___cot   1521 GACAGATGTTCGTCATCAATAA   1542


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