Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03837 and BL01194
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_03837.1.5803.seq
# -bsequence dna-align/BL01194.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03837-BL01194.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03837-BL01194.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03837
# 2: BL01194
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 507
# Identity: 233/507 (46.0%)
# Similarity: 233/507 (46.0%)
# Gaps: 192/507 (37.9%)
# Score: 408.5
#
#
#=======================================
BSNT_03837 1 ATGGGAGCACAATT-AAACTCTTATCT-------AATGTCAGAGGACGCA 42
|||..|.|.|.||| |.|| |||||.| ||||..||| |||
BL01194 1 ATGAAAACGCGATTCACAC-CTTATATCCTGATGAATGGAAGA----GCA 45
BSNT_03837 43 A--GAAGCCAGGCGGATTTTTACTTAGAATCACTCGGTGGAGAAATTGTA 90
| ||||| |...||||.||||...||...|||||.||..||| |||
BL01194 46 AAGGAAGC--GATTGATTATTACCGTGATGTACTCGATGCCGAA---GTA 90
BSNT_03837 91 ----TCACTTAAAACATTCGGTGAGGTACCAGACACTCCAGAAGA----- 131
|||.|.|.|..||| ||||| ||.|.|..||||.||
BL01194 91 AAGTTCAGTCAGACGATT-GGTGA------AGGCCCCGCAGATGAGGCAG 133
BSNT_03837 132 -----TATGAAGGAGAAAGTAATGCAT----------------------- 153
| |.|||||..|.|.|.||.||
BL01194 134 CGAACT-TTAAGGAAGACGAATTGGATTTCATCGCACATGCCGTTTTGAC 182
BSNT_03837 154 -----------CTGTCTTTGAAGATAGCTGGAAACAATATTCTGATGCTT 192
||||| .|||.|||.||.| |||.|||||
BL01194 183 AATCGGCGACGCTGTC-CTGATGATCGCCG---ACATTATTC-------- 220
BSNT_03837 193 TCTGA--TTCCTTT--------GAA--CAAGTGGTCGGTAATCGTAGCAT 230
|||| |.||||| ||| ||| |.|||..|...||||.|..
BL01194 221 -CTGAACTGCCTTTCCAAAGCGGAAACCAA-TTGTCCATTTGCGTAACGG 268
BSNT_03837 231 CAG--------TCTT----------GCTTT-----AACCTATGATAATGA 257
||| |||| ||||| ||.| ||| |.
BL01194 269 CAGCCGATGTTTCTTCGGCCAAGCGGCTTTTCGGCAAGC--TGA----GC 312
BSNT_03837 258 GAGCGAAGCAAGAGAGGCATATACCAAGCTTGGTGAGGGTGGAGAAAACA 307
|||||..|| |||| .|||||||| .|.||.||.||||.
BL01194 313 GAGCGGGGC----GAGG------TCAAGCTTG----AGCTGAAGGAAACT 348
BSNT_03837 308 AATATCCCATTGCTTTACAG-CCATGGGGCGCATACTATGGAGAAGTGAT 356
.| ||.||| || ||||||| ||....||.|.
BL01194 349 TA------------TTTCAGTCC------CGCATAC---GGCATTGTCAC 377
BSNT_03837 357 AGATAAATTTGGTGTTACATGGATGATTACTAAA---------------C 391
.|||...||.||.|| ||..|.|.||| |
BL01194 378 TGATCCGTTCGGCGT--------TGCCTTCCAAATTTTTGCCGCGCGTCC 419
BSNT_03837 392 CG--TAA 396
|| |||
BL01194 420 CGCATAA 426
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