Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02684 and BL01245

See Amino acid alignment / Visit BSNT_02684 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence dna-align/BSNT_02684___ylxL.1.5803.seq
#    -bsequence dna-align/BL01245___ylxL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02684___ylxL-BL01245___ylxL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02684___ylxL-BL01245___ylxL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02684___ylxL
# 2: BL01245___ylxL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 569
# Identity:     350/569 (61.5%)
# Similarity:   350/569 (61.5%)
# Gaps:         112/569 (19.7%)
# Score: 966.5
# 
#
#=======================================

BSNT_02684___      1 GTGAAAAACATGTCAACACTATTATGGCTTTTAAGCTTTACGCTCCACGG     50
                              |||||||||.|||||||||||.|.|||||.|||||||||||
BL01245___ylx      1 ---------ATGTCAACAATATTATGGCTTGTGAGCTTCACGCTCCACGG     41

BSNT_02684___     51 CGTTCTTCTGTACGCTGTCATTATCCTGTATACGAGGCTC-GCTGCAGTG     99
                     ..|..|..|.||....|||||.||..||.||||||||||| || ||..|.
BL01245___ylx     42 TATATTGATTTATTTCGTCATCATTTTGAATACGAGGCTCAGC-GCTTTC     90

BSNT_02684___    100 AAAGAAACAGAAAAACAGCAAAAACAGATACTTGAAGAGACGGAAAACAC    149
                     ||.|.|.|.||.|||.|||||||||||.|..|.|||||.||.||.||.||
BL01245___ylx     91 AAGGCAGCGGAGAAAGAGCAAAAACAGCTTTTGGAAGAAACCGAGAATAC    140

BSNT_02684___    150 CTTGGCGGCATTTCTGCTTGAATTAAAAGAAGAAAATGAGAAACT-----    194
                     .|||.|.||.|||.||.|.||.||||||||.||||||||.|||||     
BL01245___ylx    141 ATTGACCGCTTTTTTGATGGAGTTAAAAGACGAAAATGAAAAACTCGTTC    190

BSNT_02684___    195 ----GAT------------AGAAAATAAAGCTTCATCTGCAAGTC---AA    225
                         |||            .||||| |.|||..||     |||.|   ||
BL01245___ylx    191 AAGAGATTCGGGCGAATGCCGAAAA-AGAGCCGCA-----AAGACCGGAA    234

BSNT_02684___    226 TCAGA---TGAAGAATCC----CAAAAGTCAGGCCTTCAGACCTCTGAA-    267
                     .||.|   |||| |.|||    ||||...|.|.|||||      |.||| 
BL01245___ylx    235 ACACAGCCTGAA-ATTCCCGCTCAAACCCCCGTCCTTC------CGGAAG    277

BSNT_02684___    268 ---ACATATCAAGAGCGGGATCCAGTCCAAGAGGCAGAGAATCTTCCTGA    314
                        ||..|||    |||.||||          .||.|     |||     
BL01245___ylx    278 CGGACGAATC----GCGCGATC----------TGCCG-----CTT-----    303

BSNT_02684___    315 ACATATTGAAGGTCTGATTACAGAGGTTGACC--GTCG-GGAAGAGCTCG    361
                      ||.||.||||...||||.|..|||||.||.|  |..| |||.|||||| 
BL01245___ylx    304 -CACATCGAAGCGATGATCAATGAGGTGGAGCAGGAAGAGGATGAGCTC-    351

BSNT_02684___    362 TAAACA----GTG-AGG-----TCCA-ATCATTTGAAG-ACCAGGTCATA    399
                      ||.||    |.| |||     |||| |||.|.||||| |..||.|| |.
BL01245___ylx    352 -AATCAAAAGGAGCAGGAAGCATCCATATCCTATGAAGAAGAAGCTC-TC    399

BSNT_02684___    400 GAATTATATGAACAGGG---ATATTCGGCAAGTCAAATTGCCCAGA-AAA    445
                     |.||||||||||.||||   .|.|.|||  || .||||.| |.||| |..
BL01245___ylx    400 GCATTATATGAAAAGGGGCTCTCTCCGG--AG-GAAATCG-CAAGACAGC    445

BSNT_02684___    446 TGAAGAGCGGAAAGACAGAAATCGAGCTATTTTTAAAATTTCGCTCCAAA    495
                     ||||.|||||.||.||||||||||||||.||.|||||||||||| ..|||
BL01245___ylx    446 TGAAAAGCGGGAAAACAGAAATCGAGCTTTTCTTAAAATTTCGC-GGAAA    494

BSNT_02684___    496 GGT-GTAAAGGATTCTTGA    513
                     |.| ..|||.|||||||||
BL01245___ylx    495 GCTCAAAAACGATTCTTGA    513


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