Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02683 and BL01246
See
Amino acid alignment /
Visit
BSNT_02683 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02683___sigD.1.5803.seq
# -bsequence dna-align/BL01246___sigD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02683___sigD-BL01246___sigD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02683___sigD-BL01246___sigD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02683___sigD
# 2: BL01246___sigD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 772
# Identity: 606/772 (78.5%)
# Similarity: 606/772 (78.5%)
# Gaps: 14/772 ( 1.8%)
# Score: 2358.0
#
#
#=======================================
BSNT_02683___ 1 ATGCAATCCTTGAATTATGAAGATCAGGTGCTTTGGACGCGCTGGAAAGA 50
||||||||||||||.||||||||||||.||||||||.||||.||||||||
BL01246___sig 1 ATGCAATCCTTGAACTATGAAGATCAGATGCTTTGGTCGCGGTGGAAAGA 50
BSNT_02683___ 51 GTGGAAAGATCCTAAAGCCGGTGACGACTTAATGCGCCGTTACATGCCGC 100
.||||||||||||.|.||.||.||.||.|||||.|||||.||.|||||||
BL01246___sig 51 ATGGAAAGATCCTCAGGCAGGCGATGATTTAATCCGCCGCTATATGCCGC 100
BSNT_02683___ 101 TTGTCACATATCATGTAGGCAGAATTTCTGTCGGGCTGCCGAAATCAGTG 150
||||.|||||||||||.|||.|.||..|.|||||..||||.||.||.||.
BL01246___sig 101 TTGTGACATATCATGTCGGCCGGATAGCCGTCGGCTTGCCCAAGTCCGTT 150
BSNT_02683___ 151 CATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCT 200
||||||||||||.|..|.||||||||.|||||.|||||.|||||||||||
BL01246___sig 151 CATAAAGACGATTTGGTCAGCCTTGGCATGCTGGGTTTGTATGATGCCCT 200
BSNT_02683___ 201 TGAAAAATTTGACCCCAGCCGGGACTTAAAATTTGATACCTACGCCTCGT 250
||||||||||||.||..|..||||.||.||.||||||||.|||||.||.|
BL01246___sig 201 TGAAAAATTTGATCCGGGAAGGGATTTGAAGTTTGATACATACGCTTCCT 250
BSNT_02683___ 251 TTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTG 300
|.|||||..|.|||||.|||||.|||||.|||||.||||||||.|||||.
BL01246___sig 251 TCAGAATCAGAGGCGCTATCATCGACGGTCTTCGCAAAGAAGACTGGCTT 300
BSNT_02683___ 301 CCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAA 350
||.|||||.||.||.||||||||.||.||.||.||||||||.||.|||||
BL01246___sig 301 CCGAGAACGTCCCGTGAAAAAACGAAGAAAGTGGAAGCAGCGATCGAAAA 350
BSNT_02683___ 351 GCTTGAACAGCGGTATCTT-CGGAATGTATCGCCCGCG-GAAATTGCAGA 398
|||.||||||||.|| ||| .|.|||||.||| |||.| |||||.||||.
BL01246___sig 351 GCTCGAACAGCGTTA-CTTAAGAAATGTTTCG-CCGAGCGAAATCGCAGC 398
BSNT_02683___ 399 GGAACTCGGAATGACGGTACAGGATGTCGTGTCAACAATGAATGAAGGTT 448
.||.||.|||||||..|.|||.||.||||||.|.|||||.||||||||||
BL01246___sig 399 TGAGCTGGGAATGAGCGAACAAGACGTCGTGACCACAATCAATGAAGGTT 448
BSNT_02683___ 449 TTTTTGCAAATCTGCTGTCAATTGATGAAAAGCTCCATGATCAAGATGAT 498
|.|||||.||.||.||.|||||||||||.|||||.||.||.||.||.||.
BL01246___sig 449 TCTTTGCGAACCTCCTTTCAATTGATGAGAAGCTTCACGACCATGAAGAC 498
BSNT_02683___ 499 GGGGAAAACATTCAAGTCATGATCAGAGATGACAAAAATGTTC-----CG 543
|||||.|||.|.||.||.|||||.||.||.||||||| | ||
BL01246___sig 499 GGGGAGAACGTCCAGGTGATGATAAGGGACGACAAAA-----CGAGCACG 543
BSNT_02683___ 544 CCTGAAGAAAAGATTATGAAGGATGAACTGATTGCACAGCTTGCGGAAAA 593
|||||||||||.||..|.||.||.||||||||..|.||||||||||||||
BL01246___sig 544 CCTGAAGAAAAAATGCTCAAAGACGAACTGATCTCCCAGCTTGCGGAAAA 593
BSNT_02683___ 594 AATTCACGAACTCTCTGAAAAAGAACAGCTGGTTGTCAGTTTGTTCTACA 643
|||..||||.||.||.||||||||.|||||.||..||||.||.|||||.|
BL01246___sig 594 AATAAACGAGCTATCAGAAAAAGAGCAGCTCGTGATCAGCTTATTCTATA 643
BSNT_02683___ 644 AAGAGGAGTTGACACTGACAGAAATCGGACAAGTATTAAATCTTTCTACG 693
||||.|||.||||.|||||.|||||||||||.||.||.|||.|.||.||.
BL01246___sig 644 AAGAAGAGCTGACGCTGACGGAAATCGGACAGGTTTTGAATTTGTCGACT 693
BSNT_02683___ 694 TCCCGCATATCTCAGATCCATTCAAAGGCATTATTTAAATTAAAGAATCT 743
|||||.||.||.|||||.||.||.|||||..|.||.|||||.|||.||||
BL01246___sig 694 TCCCGTATTTCACAGATTCACTCCAAGGCGCTTTTGAAATTGAAGCATCT 743
BSNT_02683___ 744 GCTGGAAAAAGTGATACAATAA 765
||||||.||||||.|.|||||.
BL01246___sig 744 GCTGGATAAAGTGGTGCAATAG 765
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.