Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02677 and BL01250

See Amino acid alignment / Visit BSNT_02677 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:23
# Commandline: needle
#    -asequence dna-align/BSNT_02677___cheA.1.5803.seq
#    -bsequence dna-align/BL01250___cheA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02677___cheA-BL01250___cheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02677___cheA-BL01250___cheA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02677___cheA
# 2: BL01250___cheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2109
# Identity:    1499/2109 (71.1%)
# Similarity:  1499/2109 (71.1%)
# Gaps:         177/2109 ( 8.4%)
# Score: 5229.5
# 
#
#=======================================

BSNT_02677___      1 ATGGATATGAATCAGTATTTAGATGTCTTTATTGATGAGAGTAAAGAACA     50
                     ||||||||||||||.||||||||.|||||||||||.||.||.|.||||||
BL01250___che      1 ATGGATATGAATCAATATTTAGACGTCTTTATTGAAGAAAGCAGAGAACA     50

BSNT_02677___     51 TTTACAAACATGTAATGAAAAGCTTCT-----TCTTTTAGAGAAAGACCC     95
                     |||.|||||.|||||.|||||..|.||     ||     ||.|||.|.||
BL01250___che     51 TTTGCAAACCTGTAACGAAAAATTGCTCGAACTC-----GAAAAAAATCC     95

BSNT_02677___     96 GACTGATCTT-CAGCTCGTACATGATATATTCAGGGCTGCCCATACATTA    144
                     |||.|| ||| |||||.||.||||||||.|||||.||.||.|||||.||.
BL01250___che     96 GACAGA-CTTGCAGCTTGTCCATGATATTTTCAGAGCGGCTCATACCTTG    144

BSNT_02677___    145 AAAGGAATGAGCGCAACGATGGGCT------ACACGG---ATTTA--GCA    183
                     |||||.|||||||||||||||||||      |||.||   |||||  |||
BL01250___che    145 AAAGGGATGAGCGCAACGATGGGCTATGAAGACATGGCTCATTTAACGCA    194

BSNT_02677___    184 CACCTAACCCATCTGCTTGAAAACGTGCTGGATGC-ATTCCGAAACGGAG    232
                     ||        .||||   ||||||||||||||||| ||| |||||.|.||
BL01250___che    195 CA--------GTCTG---GAAAACGTGCTGGATGCGATT-CGAAATGAAG    232

BSNT_02677___    233 ACATGGCAGTCACCTCAGACTGGCTGGATATTTTGTTTGAAGCTCTGGAT    282
                     |.|||.|..||||.|||||.|||.||||..|..||||||||||.||.|||
BL01250___che    233 AAATGACCATCACGTCAGAGTGGATGGACGTCATGTTTGAAGCGCTCGAT    282

BSNT_02677___    283 CACCTGGAAGCAATGGTTCAGTCTATTATTGATGGCGGGGATGGTAAAAG    332
                     .||||.||||||||.||.|..||.||.||.||.|||||.||.||.|||||
BL01250___che    283 GACCTTGAAGCAATCGTCCTTTCGATCATCGAAGGCGGCGACGGCAAAAG    332

BSNT_02677___    333 AGATATCTCAGAAGTGAGTGCCAAGCTTGATGTGAATGGTGCGCACGCTG    382
                     ||||.|.||.|||||..|.||||||||||||||||..||.||..||...|
BL01250___che    333 AGATGTTTCCGAAGTCTGCGCCAAGCTTGATGTGACAGGGGCAAACAAGG    382

BSNT_02677___    383 AATCCGCTGCCTCCGCGGAACTTGCAGAAGCAC----AGAG-----TTCA    423
                     |   .||.||..|.|||      ||||||||.|    ||.|     |||.
BL01250___che    383 A---GGCGGCAGCAGCG------GCAGAAGCGCCTGAAGCGGCGTCTTCC    423

BSNT_02677___    424 GCATCTGATTGGGAATATGATGAATTTGAACGTACAGTTATACAAGAAGC    473
                     |.|.|..|.|||...|||||.||||||.||||.||.||.||....|||||
BL01250___che    424 GAAACGAAATGGTCCTATGACGAATTTCAACGAACGGTCATCGCCGAAGC    473

BSNT_02677___    474 GGAGGAGCAAGGCTTCAAACGATATGAAATCAAGATTTCTCTGAACGAAA    523
                     .|||||.||||||||.|||.|.|..||||||||..||.|..||||.||..
BL01250___che    474 TGAGGAACAAGGCTTTAAATGTTTCGAAATCAAAGTTGCATTGAAAGAGG    523

BSNT_02677___    524 ACTGTATGTTAAAAGCAGTTCGTGTCTATATGGTGTTTGAAAAACTAAAT    573
                     |||||.||||.||.|..|||||.||.||.|||||.|||||..|.||.||.
BL01250___che    524 ACTGTCTGTTGAAGGGCGTTCGGGTGTACATGGTATTTGAGCAGCTGAAC    573

BSNT_02677___    574 GAAGTCGGAGAAGTAGCCAAAACAATTCC---AAGTGCTGAAGTGCTTGA    620
                     ||.|||||.|||||.|..|||||.|||||   ||   |.|||||.|||||
BL01250___che    574 GAGGTCGGCGAAGTCGTTAAAACGATTCCGGAAA---CAGAAGTCCTTGA    620

BSNT_02677___    621 AACGGAAGATTTTGGAACTGATTT--TCAAGTTTGTTTCTTAACACATCA    668
                     |.||||.|||||||...|.||.||  |||  |.||.||.|||    |.||
BL01250___che    621 ATCGGAGGATTTTGATTCCGAATTCGTCA--TCTGCTTTTTA----AGCA    664

BSNT_02677___    669 ATCAGCGGA-------AGACATTGAACAATTAATCAATGGCGTGTCGGAA    711
                     |.|| ||||       |||..||.|||||  ||||||.|||||.||.|||
BL01250___che    665 AACA-CGGAAAAGAAGAGATTTTCAACAA--AATCAACGGCGTATCTGAA    711

BSNT_02677___    712 ATTGAGCATGTTGAAGTCATTCAAGGGGCTCCTTTAACATCAGCCGAAAA    761
                     |||||..|..|.|||||.|           ||        .|||.|||||
BL01250___che    712 ATTGAAAAAATAGAAGTGA-----------CC--------GAGCTGAAAA    742

BSNT_02677___    762 ----------GCCTGAAGAATCTAAGCAAGAAGATTCACCAGCAGCAGCT    801
                               |.|..|||||  .||||  ||||     ||.||.|||   
BL01250___che    743 ACGATTTTTCGGCACAAGAA--GAAGC--GAAG-----CCCGCCGCA---    780

BSNT_02677___    802 GTACCTGCGAA---------GCA-----------GGAGAAACAA------    825
                          |.||||         |||           |||||||.||      
BL01250___che    781 -----TCCGAAAAAGAAACCGCACCGAAAGAGGCGGAGAAAAAACCGGCT    825

BSNT_02677___    826 AAACAGC----CTGCTAAAAACGATGA-GCAGGCGAAGCAT---TCAGCC    867
                     ||.||||    |.||.|||||    || || ||||||.|.|   .|||.|
BL01250___che    826 AAGCAGCCGGACGGCAAAAAA----GACGC-GGCGAAACCTGCGGCAGGC    870

BSNT_02677___    868 GGCGGATCTAAAACAATTCGTGTCAACATTGACAGGCTTGATTCTTTAAT    917
                     ||||||.|.||.||.||.||.||||||||.|||.|.||.|||||.|||||
BL01250___che    871 GGCGGAACGAAGACGATCCGCGTCAACATCGACCGCCTCGATTCATTAAT    920

BSNT_02677___    918 GAACTTATTTGAAGAGCTTGTCATTGACCGCGGGCGTCTCGAGCAGATTG    967
                     ||||.|.|||||||||||.|||||||||.|.|||||..|.||||||||.|
BL01250___che    921 GAACCTGTTTGAAGAGCTGGTCATTGACAGGGGGCGCTTAGAGCAGATCG    970

BSNT_02677___    968 CGAAAGAGCTTGAGCACAATGAACTGACTGAAACGGTTGAACGAATGACG   1017
                     |.||||||||.||.||||..|||.|.||.|||||.||.|||||.|||||.
BL01250___che    971 CCAAAGAGCTAGAACACAGCGAATTAACGGAAACCGTCGAACGGATGACT   1020

BSNT_02677___   1018 AGAATTTCCGGAGATTTGCAATCGATTATTCTGAATATGAGAATGGTCCC   1067
                     ||||||||.||.||..||||.|||||.||.||.||||||||||||||.||
BL01250___che   1021 AGAATTTCAGGCGACCTGCAGTCGATCATCCTCAATATGAGAATGGTTCC   1070

BSNT_02677___   1068 GGTTGAAACTGTTTTTAACAGATTCCCGAGAATGATTCGCCAGCT-TCAG   1116
                     |||.|||||.||.||.|||.||||||||.|.|||.|.|||||||| .|| 
BL01250___che   1071 GGTAGAAACGGTGTTCAACCGATTCCCGCGCATGGTCCGCCAGCTGACA-   1119

BSNT_02677___   1117 AAAGAGCTGAATAAAAAAATTGAACTCTCGATCATCGGTGCGGAAACTGA   1166
                     |||||..|.||||||||.||.||.||.|||||..||||.||||||||.||
BL01250___che   1120 AAAGAATTAAATAAAAAGATCGAGCTGTCGATTTTCGGAGCGGAAACAGA   1169

BSNT_02677___   1167 ACTGGATCGTACAGTAATTGATGAAATCGGAGATCCACTCGTTCACTTGA   1216
                     .||.||..|.||.|||||.||.||||||||.||.||.||.||.|||.|..
BL01250___che   1170 GCTTGACAGAACGGTAATAGACGAAATCGGCGACCCGCTTGTCCACCTCT   1219

BSNT_02677___   1217 TCAGAAACAGTATTGACCATGGTATCGAGGCGCCGGAA-ACACGTTTGCA   1265
                     |.||||||||..||||.||.||.|||||||||||.||| .|| |..||.|
BL01250___che   1220 TGAGAAACAGCCTTGATCACGGGATCGAGGCGCCTGAAGTCA-GGGTGAA   1268

BSNT_02677___   1266 AAAGGGAAAACCGGAATCAGGAAAAGTTGTGCTTAAAGCTTATCACAGCG   1315
                     |||.||.|||||.|||.|.||..||||....||.|||||.||.|||||||
BL01250___che   1269 AAACGGTAAACCTGAAACCGGTCAAGTCCGCCTGAAAGCATACCACAGCG   1318

BSNT_02677___   1316 GCAACCATGTCTTTATCGAAGTAGAGGATGACGGCGCAGGCCTTAATCGC   1365
                     |.|||||||||||||||||.||.||||||||||||||.|||.|.||.|||
BL01250___che   1319 GTAACCATGTCTTTATCGAGGTGGAGGATGACGGCGCCGGCATCAACCGC   1368

BSNT_02677___   1366 AAAAAAATTCTGGAAAAAGCGCTTGAGCGCGGGGTCATAACGGAAAAAGA   1415
                     |||||..|.||.||||||||||||||||||...|||||.||.|||...||
BL01250___che   1369 AAAAAGGTGCTCGAAAAAGCGCTTGAGCGCAACGTCATTACTGAACGCGA   1418

BSNT_02677___   1416 AGCTGAAACCTTAGAAGACAACCAAATTTACGAATTGATTTTTGCTCCGG   1465
                     |||.|||||..|.|||||..|..||||..|||...|.||||||||.||||
BL01250___che   1419 AGCCGAAACGATCGAAGATCATGAAATCGACGCGCTCATTTTTGCGCCGG   1468

BSNT_02677___   1466 GGTTCTCAACTGCTGACCAAATTTCTGATATTTCCGGCCGCGGTGTAGGA   1515
                     |.||||||||.||.||.|||||.||.||||||||.||.|||||.||.|| 
BL01250___che   1469 GATTCTCAACCGCAGATCAAATCTCGGATATTTCAGGACGCGGAGTCGG-   1517

BSNT_02677___   1516 CTT-GACGTTGTAAAAAACAAACTGGAGTCTCTTGGCGGTTCAGTCAGTG   1564
                     ||| ||||||||.||||.|||.|||||.||..|.||||||||.|||||..
BL01250___che   1518 CTTAGACGTTGTCAAAAGCAAGCTGGAATCGTTGGGCGGTTCTGTCAGCA   1567

BSNT_02677___   1565 TGAAATC-AGCCGAGGGTCAAGGCTCTCTATTCAGCATCCAGCTGCCGCT   1613
                     |.||||| || |||.||..||||.||.||.|||..|||||||||.|||||
BL01250___che   1568 TCAAATCGAG-CGAAGGCGAAGGTTCGCTTTTCTCCATCCAGCTTCCGCT   1616

BSNT_02677___   1614 TACCTTGTCTATTATTTCAGTTCTGCTGATTAAGTTGGAAGAAGAGATAT   1663
                     |||..||||.||.|||||.||.|||.|..|.||..|.|||.|.||.|..|
BL01250___che   1617 TACACTGTCGATCATTTCCGTGCTGTTAGTCAAACTTGAAAATGAAACGT   1666

BSNT_02677___   1664 TTGCCATTCCGATTTCTTCAATCATTGAGACAGCAGTTATTGACAGAAAA   1713
                     ||||.||||||||||||||.||.||.||.||.||.||.||.||.|..|||
BL01250___che   1667 TTGCGATTCCGATTTCTTCTATTATAGAAACGGCTGTCATCGATAAGAAA   1716

BSNT_02677___   1714 GACATTTTGCAAACGCATGACCGTGAAGTGATTGACTTTAGAGGGCATAT   1763
                     ||.|||.|.||||||||.|||||.||||||||.||.||.||.||.|||||
BL01250___che   1717 GATATTCTTCAAACGCACGACCGCGAAGTGATCGATTTCAGGGGCCATAT   1766

BSNT_02677___   1764 TGTCCCTGTCGTTTATTTAAAAGAAGAGTTTAAAATAGAAGATACAAGAA   1813
                     .||.||.||.|||||..|.||||||.|||||||..|.||.|||.|...|.
BL01250___che   1767 CGTACCGGTGGTTTACCTGAAAGAACAGTTTAATGTTGAGGATTCTTCAG   1816

BSNT_02677___   1814 AAGATGCGGAACAGCTCCATATCATTGTCGTGAAAAAAGGCGACAAACCT   1863
                     |.|||...||.|||||.||..||||.||||||||||||||.|||||.|..
BL01250___che   1817 ATGATCTTGATCAGCTTCACGTCATCGTCGTGAAAAAAGGAGACAAGCTG   1866

BSNT_02677___   1864 ACTGCATTTGTGGTGGACTCCTTTATTGGCCAGCAGGAAGTTGTGCTGAA   1913
                     ||.||||||||.||.|||||||||||.||||||||||||||.||..|.||
BL01250___che   1867 ACGGCATTTGTTGTCGACTCCTTTATCGGCCAGCAGGAAGTCGTATTAAA   1916

BSNT_02677___   1914 ATCACTCGGAGATTATTTAACAAACGTCTTTGCAATTTCCGGAGCTACTA   1963
                     |||||||||.|||||||||||||||||||||||.||||||||.||.||.|
BL01250___che   1917 ATCACTCGGCGATTATTTAACAAACGTCTTTGCCATTTCCGGCGCGACGA   1966

BSNT_02677___   1964 TTTTAGGAGACGGAGAAGTAGCGCTCATTATTGATTGTAATGCACTGATT   2013
                     ||||.|||||||||.|||||||.||.||.||.||.||.||.||.|   ||
BL01250___che   1967 TTTTGGGAGACGGACAAGTAGCCCTGATCATCGACTGCAACGCCC---TT   2013

BSNT_02677___   2014 ATTTAA---   2019
                     |||.||   
BL01250___che   2014 ATTAAATAG   2022


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