Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02673 and BL01253

See Amino acid alignment / Visit BSNT_02673 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:23
# Commandline: needle
#    -asequence dna-align/BSNT_02673___flhF.1.5803.seq
#    -bsequence dna-align/BL01253___flhF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02673___flhF-BL01253___flhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02673___flhF-BL01253___flhF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02673___flhF
# 2: BL01253___flhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity:     737/1206 (61.1%)
# Similarity:   737/1206 (61.1%)
# Gaps:         198/1206 (16.4%)
# Score: 2104.5
# 
#
#=======================================

BSNT_02673___      1 ATGAAAATAAAAAAATTTACTGCTGCTTCAATGCAAGAAGCTGCACTTCT     50
                     ||||||||.|||||||||...||||.|||.|||||.|||||..||...|.
BL01253___flh      1 ATGAAAATCAAAAAATTTGTAGCTGGTTCTATGCAGGAAGCCACAAAGCA     50

BSNT_02673___     51 CATCAGAAAAGAGTTAGGTAATGAAGCGGTCATATTAAATTCAAAAAAAA    100
                     .||.|.|.|.|||.|.||.|||||.||.||.||.||.|||||.|||||||
BL01253___flh     51 AATTATACAGGAGCTCGGGAATGACGCCGTAATCTTGAATTCTAAAAAAA    100

BSNT_02673___    101 TTAAAAAGCGAAAATGGTTTGGCCTCATCAACAAGCCTGCTGTTGAAGTA    150
                     ||.|||||.||||||...|.|||.|..|.||.||..|.|..||||||||.
BL01253___flh    101 TTCAAAAGAGAAAATTTCTCGGCTTTGTGAAAAAAACCGGGGTTGAAGTG    150

BSNT_02673___    151 ATCGCCGTATTGGATCAGGACTTTCTTGA------GAAAAAAACGCCTCA    194
                     |||||.||..|.||.|||||||||...||      |||..||..||.|||
BL01253___flh    151 ATCGCGGTCGTCGACCAGGACTTTTCCGACGCAAGGAAGCAAGAGCGTCA    200

BSNT_02673___    195 GAAGGCAGCTGAACCGAAACAAA--CATTAAAAACTCCGGT-CAGCAGTC    241
                     .|||.|.|.|...|.|.||||||  |.||     |.||.|| |.||||.|
BL01253___flh    201 AAAGCCCGTTTTCCGGGAACAAAGCCCTT-----CGCCTGTCCCGCAGCC    245

BSNT_02673___    242 CGA-------------------------AAATAGAGGAGAGAACATATCC    266
                     .||                         |||.||..||.||||      |
BL01253___flh    246 GGACCATCTTGATTTGGCAAGCCAAGTGAAAGAGCTGAAAGAA------C    289

BSNT_02673___    267 CCCTCAAATTCCGGCGCAACAGGAGCTAGGTGATTTTTCAGCATATCAAT    316
                     ..||..||.|.||  |||.||.|||             ||||.|.|..| 
BL01253___flh    290 TGCTGGAAATGCG--GCATCATGAG-------------CAGCCTGTTGA-    323

BSNT_02673___    317 CTGTACTTCCTGAGCCGCTGCGAAAAGCAGAAAAGCTTTTG--CAAGAAA    364
                      |||.||.|||||.||||||..|||.||.||..||||..||  .||||||
BL01253___flh    324 -TGTGCTGCCTGAACCGCTGAAAAAGGCGGACCAGCTCCTGGCAAAGAAA    372

BSNT_02673___    365 CAGGGATCAAAGAGTC---------TACGAAAACGAACACTC-------T    398
                     ..||.|||     |.|         |||||||.||    |||       |
BL01253___flh    373 GGGGTATC-----GCCGGCCATCCGTACGAAAGCG----CTCGGCCGGTT    413

BSNT_02673___    399 GAAAAAATTGCTTCGCTTCTCTGTTGAAGCAGGCGGC------TTGACTG    442
                     ||       .|..|.||||    ||.||| ||.||||      |.|||.|
BL01253___flh    414 GA-------TCAGCACTTC----TTTAAG-AGACGGCGAAGAGTGGACGG    451

BSNT_02673___    443 AAGAAAATGTTGTCGGCAAACTT--CAGGAAATACTATG--CGATACGCT    488
                     |.||||| |..|..|||..||||  |||   ||.||.||  ||||...||
BL01253___flh    452 ATGAAAA-GACGCTGGCGCACTTAACAG---ATGCTTTGGCCGATCTTCT    497

BSNT_02673___    489 GCCCGCAGCAGACAA-GTGG--CAGGA---GCCAATTCATTCAAAATATA    532
                     .|||      ||.|| .|||  |||||   |.|.||||||||..|||||.
BL01253___flh    498 TCCC------GATAATCTGGAACAGGACGTGGCGATTCATTCGCAATATG    541

BSNT_02673___    533 TCGTTCTCTTTGGTTCAACAGGGGCTGGTAAAACAACTACACTGGCTAAA    582
                     ||||.|||||.||.||.||.||.|..||.|||||.||.|||.||||.||.
BL01253___flh    542 TCGTGCTCTTCGGATCGACCGGAGTCGGCAAAACGACGACATTGGCAAAG    591

BSNT_02673___    583 CTCGCAGCCATATCTATGCTTGAAAAACATAAAAAAATCGCTTTTATTAC    632
                     |||||.||....|||.|.||.|||||.||.|||||||||||||||||.||
BL01253___flh    592 CTCGCCGCTTCTTCTGTACTGGAAAAGCAGAAAAAAATCGCTTTTATCAC    641

BSNT_02673___    633 AACAGATACGTATCGTATTGCAGCTGTTGAACAGTTGAAAACATACGCTG    682
                     .||.||||||||..|.||||||||.|||||||||.|.|..|||||.||.|
BL01253___flh    642 GACCGATACGTACAGGATTGCAGCGGTTGAACAGCTCAGGACATATGCCG    691

BSNT_02673___    683 AACTGCTGCAGGCTCCTCTGGAAGTTTGCTATACAAAAGAAGAATTT---    729
                     |.||.|||.|.||.||.||.||.||.|||||.||.||||||||.|||   
BL01253___flh    692 AGCTTCTGAATGCGCCGCTTGAGGTGTGCTACACGAAAGAAGAGTTTAAA    741

BSNT_02673___    730 ------CAGCAGGCGAAGGAGTT-----ATTTTCTGAGTATGATCATGTG    768
                           |||||    ||  ||||     ||||        |||.||.||.
BL01253___flh    742 GCTGCCCAGCA----AA--AGTTCGCCGATTT--------TGACCACGTC    777

BSNT_02673___    769 TTTGTTGATACAGCCGGAAGAAACTTCAAGGACCCGCAATACATTGAT--    816
                     ||..|||||||.||.||..|.||.|||||.|||..||||||   || |  
BL01253___flh    778 TTCATTGATACGGCGGGCCGGAATTTCAAAGACGGGCAATA---TG-TCA    823

BSNT_02673___    817 --GAACTGAAAGAAACGATTCCTTTTGAGAGCAGCATTCAGTCATTTCTT    864
                       ||.|||||.||||..|||||.||||||.|.|..||.|||.|.|||||.
BL01253___flh    824 GGGAGCTGAAGGAAATCATTCCGTTTGAGCGTAAGATACAGGCGTTTCTC    873

BSNT_02673___    865 GTTTTATCCGCGAC-TGCAAAATATGAAGATATGAAGCATATTGTCAAAC    913
                     ||..|.|||||||| .|| ||.||.||.|||||||||.|..|..|.||.|
BL01253___flh    874 GTCATGTCCGCGACGAGC-AAGTACGAGGATATGAAGGAGCTCATTAAGC    922

BSNT_02673___    914 GGTTTTCATCCGTCCCTGTCAATCAGTATATTTTTACGAAAATAGATGA-    962
                     .|||.|||..|.|.||..||.||||||..||.||.||||||.|.||||| 
BL01253___flh    923 AGTTCTCAAGCATTCCGATCGATCAGTTGATATTCACGAAAGTGGATGAG    972

BSNT_02673___    963 AACGACTTCCTTAGGTTCTGTATTTAATATACTGGCAGAATCAAAAATAG   1012
                     |.||| |||.||.||....||..|.|||.|.||.||.|||||.|.|||.|
BL01253___flh    973 ACCGA-TTCGTTGGGAAGCGTCATGAATCTGCTCGCCGAATCGAGAATCG   1021

BSNT_02673___   1013 GTGTCGGGTTTATGACAAACGGACAGAATGTGCCTGAGGATATACAGACT   1062
                     |..||||.|.|||.|||||||||||.|||||.||.||||||||       
BL01253___flh   1022 GCCTCGGCTATATTACAAACGGACAAAATGTTCCGGAGGATAT-------   1064

BSNT_02673___   1063 GTATCTCCACTTGGT-----------TTTGTGAGGATGCT------GTGC   1095
                        .|.|.|||| ||           |||||.||..||||      |||.
BL01253___flh   1065 ---CCGCTACTT-GTCAAACGCAGCATTTGTCAGACTGCTTACGGGGTGT   1110

BSNT_02673___   1096 AGATGA   1101
                     .||   
BL01253___flh   1111 TGA---   1113


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