Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02672 and BL01254

See Amino acid alignment / Visit BSNT_02672 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_02672___flhA.1.5803.seq
#    -bsequence dna-align/BL01254___flhA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02672___flhA-BL01254___flhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02672___flhA-BL01254___flhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02672___flhA
# 2: BL01254___flhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2052
# Identity:    1573/2052 (76.7%)
# Similarity:  1573/2052 (76.7%)
# Gaps:          33/2052 ( 1.6%)
# Score: 5980.5
# 
#
#=======================================

BSNT_02672___      1 ATGTCAACAAGAGATTTATCCGTTTTAATAAGTGTTGTCCTCATTGTGGC     50
                     |||||..|||||||||||||..|||||....|.|||||||||||||||||
BL01254___flh      1 ATGTCTGCAAGAGATTTATCTATTTTATCCGGCGTTGTCCTCATTGTGGC     50

BSNT_02672___     51 GATGCTGGTGATTCCATTTCCTCCATGGCTGTTAAGTATTTTGATCATTA    100
                     .|||||..|.||.||.|||||..|||||.||||.||.||.||.||.||..
BL01254___flh     51 AATGCTTATCATACCCTTTCCAACATGGATGTTGAGCATCTTAATTATCG    100

BSNT_02672___    101 TTAATATTTCTCTTGCGTTGATCGTGCTTCTCACCACAATGAATATGCAG    150
                     |||||||||||||||||||.|||||||||||||||||||||||.|||||.
BL01254___flh    101 TTAATATTTCTCTTGCGTTAATCGTGCTTCTCACCACAATGAACATGCAA    150

BSNT_02672___    151 GAAGCGCTTCAGTTTTCGATTTTTCCGTCACTGTTGCTGCTTTTGACCCT    200
                     |||.||||.||.||||||||||||||.||..||.||||.||.|||||.||
BL01254___flh    151 GAACCGCTGCAATTTTCGATTTTTCCTTCTTTGCTGCTCCTCTTGACGCT    200

BSNT_02672___    201 ATTTCG-TTTGGGCTTGAACGTCTCAACTACCCGTTCAATTCTTTCACAC    249
                     .||.|| .|||||| ||||.||.||.||.||.|||||.|||||.||..||
BL01254___flh    201 GTTCCGCCTTGGGC-TGAATGTATCGACGACGCGTTCGATTCTGTCCAAC    249

BSNT_02672___    250 GGTGAAGGAGGGAAAGTCGTCGAGACTTTCGGAAATTTCGTTGTCGGCGG    299
                     |||||.|..||.|||||.||||||||.|||||...|||||||||||||||
BL01254___flh    250 GGTGATGCGGGAAAAGTAGTCGAGACGTTCGGGTCTTTCGTTGTCGGCGG    299

BSNT_02672___    300 AAATGTATTAGTTGGACTCGTTGTATTTATCATCCTTATTATTATTCAGT    349
                     |||.||.||.||.||.||||||||.||||||||..|.||.||||||||.|
BL01254___flh    300 AAACGTTTTGGTCGGTCTCGTTGTCTTTATCATTTTGATCATTATTCAAT    349

BSNT_02672___    350 TTATCGTCATTACAAAAGGTGCTGAACGTGTTTCCGAGGTTGCAGCAAGG    399
                     ||||||||||.||.|||||.||.|||||.||.||.||.|||||.||.||.
BL01254___flh    350 TTATCGTCATAACGAAAGGGGCGGAACGGGTATCTGAAGTTGCTGCCAGA    399

BSNT_02672___    400 TTTACGCTGGACGCAATGCCGGGGAAGCAGATGAGTATTGATGCTGATTT    449
                     ||.|||||.|||||.||||||||.||.||||||||.||||||||.|||||
BL01254___flh    400 TTCACGCTCGACGCCATGCCGGGAAAACAGATGAGCATTGATGCCGATTT    449

BSNT_02672___    450 AAACGCAGGGATGATTACCGAACAGGAAGCGAAGCATCGCCGCGAAAAAG    499
                     .||.||.||.|||.|.|||||.||||||||||||...|||||.||.||.|
BL01254___flh    450 GAATGCCGGAATGGTGACCGAGCAGGAAGCGAAGGTGCGCCGTGAGAAGG    499

BSNT_02672___    500 TGGCAAGAGAAGCAGACTTTTATGGAGCAATGGACGGTGCCAGTAAATTT    549
                     ||||..|.|||||.|||||.||||||||.||||||||.||.||.|||||.
BL01254___flh    500 TGGCCCGTGAAGCCGACTTCTATGGAGCGATGGACGGAGCGAGCAAATTC    549

BSNT_02672___    550 GTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTAT    599
                     ||.|||||.||.||.||.||.||.||||||||.||..|.|||||..|.||
BL01254___flh    550 GTGAAAGGGGATGCGATCGCAGGGATCATCATCGTCCTTATCAACGTCAT    599

BSNT_02672___    600 TTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAGG    649
                     |||||||||.||.|||||.|||||.||..|....|||..||||||.||.|
BL01254___flh    600 TTTCGGAATTGTCATCGGCATGCTGCAAAAACAAATGAGCATTCAGGAAG    649

BSNT_02672___    650 CTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAA    699
                     |.||||||||||||||..|.|||.|||||||.||.|||||.||.||.||.
BL01254___flh    650 CCGCTTCACACTTTACACTCCTGTCTGTAGGCGACGGAATCGTATCTCAG    699

BSNT_02672___    700 ATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGC    749
                     .|.||.||.||.||.||.||.|||||.||||||||.||.||.||||||||
BL01254___flh    700 CTGCCTGCGCTCTTGATCTCAACGGCGACGGGTATCGTCGTGACAAGAGC    749

BSNT_02672___    750 TGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGT    799
                     .||.||.||.||||||.|.||.||.||.||||||||||||||||||||.|
BL01254___flh    750 GGCGTCGGACGGAAACCTCGGCCACGATATTACAGGCCAGCTGTTTGCCT    799

BSNT_02672___    800 ATCCAAAGCTTTTATACGTCGCAGCAGCTACGATCATGCTTTTAGGTATT    849
                     ||||.||||||||.||.|||.|.||.|..|||||..|.||..|.||.|||
BL01254___flh    800 ATCCGAAGCTTTTGTATGTCACGGCGGGAACGATTTTCCTGCTCGGGATT    849

BSNT_02672___    850 TTCACTCCGATCGGCATCCTTCTGACGGGGCCGCTTGCGGGATTGCTTGC    899
                     |||||.|||||||||||.||.|||||.||.||.||.||      .||| |
BL01254___flh    850 TTCACGCCGATCGGCATTCTCCTGACAGGCCCTCTGGC------TCTT-C    892

BSNT_02672___    900 TTTT-------GGCGCATATACACTATCTATATCAGGTAAGGAAAAAGAA    942
                     ||.|       ||||..||||..||.||.|.|.|.|||.|.||.||.|||
BL01254___flh    893 TTCTCGCCGCAGGCGGCTATATGCTCTCCAAAGCCGGTGAAGAGAAGGAA    942

BSNT_02672___    943 GAAGTGGATGAGATTCTTGAGGAAGAGGCTGAGGTGGACGAGCTTAAAAG    992
                     .|||||||.||.||.|||||||||||.|||||.|||||.||..|.|||||
BL01254___flh    943 AAAGTGGAGGATATCCTTGAGGAAGAAGCTGAAGTGGATGAATTAAAAAG    992

BSNT_02672___    993 CCCTGAAAGTGTCGTTCAGCTTCTGCATATAGATCCGATAGAATTTGAGT   1042
                     |||.|||||.|||||.||.||.||..||||.||||||||.||.|||||.|
BL01254___flh    993 CCCCGAAAGCGTCGTCCATCTGCTTGATATTGATCCGATCGAGTTTGAAT   1042

BSNT_02672___   1043 TTGGATATGGCCTGATACCGCTTGCTGATGCCAATCAAGGCGGTGATTTA   1092
                     |.||.||.||..||||.||||||||.|||||.|||||.|||||.|||.|.
BL01254___flh   1043 TCGGCTACGGATTGATTCCGCTTGCAGATGCAAATCAGGGCGGCGATCTG   1092

BSNT_02672___   1093 TTAGACCGAATTGTTATGATACGCCGTCAGTTGGCTTTGGAACTCGGGCT   1142
                     ||.|||.|||||||.|||||..|.||.|||.|.||..|.||||||||.||
BL01254___flh   1093 TTGGACAGAATTGTCATGATCAGGCGCCAGCTCGCGCTTGAACTCGGACT   1142

BSNT_02672___   1143 TGTCATTCCTGTCGTGCGAATCAGAGATAATATAGCGTTGCAGCCTAATG   1192
                     |||||||||.|||||..|||||||.|||||.||.||..|.|||||.||.|
BL01254___flh   1143 TGTCATTCCGGTCGTCAGAATCAGGGATAACATCGCTCTTCAGCCGAACG   1192

BSNT_02672___   1193 AATACCGATTGAAAATTAAAGGAAACGAAGTAGCAAAAGGCGAGCTGTTG   1242
                     |.|||.|..|.||||||||||||||||||||.||.|||||||||||..|.
BL01254___flh   1193 AGTACAGGCTCAAAATTAAAGGAAACGAAGTCGCGAAAGGCGAGCTTCTC   1242

BSNT_02672___   1243 CTTGATCATTATTTAGCGATGTCGCCTACTCCTGAGGACGATCTCATTGA   1292
                     ||.|||||.|.|.|.||||||||.||.||....||.|||||||..||.||
BL01254___flh   1243 CTCGATCACTTTCTGGCGATGTCTCCGACAGGCGAAGACGATCAGATCGA   1292

BSNT_02672___   1293 AGGGATTGAAACAGTGGAGCCTTCATTCGGTCTGCCGGCTAAATGGATTA   1342
                     |||||||||.|||.|.||.||.||.||||||||.||||||||||||||  
BL01254___flh   1293 AGGGATTGACACAATCGAACCGTCCTTCGGTCTTCCGGCTAAATGGAT--   1340

BSNT_02672___   1343 GCGAAGCGGTA------AAGGATGAAGCCGACATGCTTGGTTATACAGTA   1386
                         |.|||.|      ||.|||.|.|||||.|||||.||.||.||.||.
BL01254___flh   1341 ----ACCGGAATCTCAGAAAGATCAGGCCGAAATGCTCGGGTACACGGTT   1386

BSNT_02672___   1387 GTTGATCCTGCATCAGTCGTTTCAACGCATATTACGGAGAAAATTAAGCA   1436
                     ||.|||||.||.||||||||.||.||.||||||||||||.|..|.||..|
BL01254___flh   1387 GTCGATCCGGCTTCAGTCGTATCGACCCATATTACGGAGCAGGTGAAAAA   1436

BSNT_02672___   1437 GCATGCCCACGAATTGATCGGAAGGCAGGAGACAAAACAGCTGATCGATC   1486
                     |||.|||||.||..||||||||||.|||||.||.||||||||||||||.|
BL01254___flh   1437 GCACGCCCATGAGCTGATCGGAAGACAGGAAACGAAACAGCTGATCGACC   1486

BSNT_02672___   1487 ACTTGAAAGAATCGTATCCAGTCCTGGTTGAAGAGGTTACGCCGAATCCA   1536
                     |||||||||||||.|||||.||.|||||.||||||||..||||||||||.
BL01254___flh   1487 ACTTGAAAGAATCTTATCCTGTACTGGTCGAAGAGGTCTCGCCGAATCCG   1536

BSNT_02672___   1537 TTGTCTGTCGGTGATATTCAGAAAGTGCTTGCTAAGCTTTTAAAAGAAAA   1586
                     .|||||||||||||.||||||||||||||.||.||.|||.|.||||||||
BL01254___flh   1537 CTGTCTGTCGGTGACATTCAGAAAGTGCTGGCAAAACTTCTGAAAGAAAA   1586

BSNT_02672___   1587 AGTTTCAATTCGAAACTTAGTAACGATTTTTGAAACGCTTGCTGACTATG   1636
                     |||.||.||..|.|||||.||.||.||.|||||||||||.||.|||||.|
BL01254___flh   1587 AGTATCGATCAGGAACTTGGTGACAATCTTTGAAACGCTGGCCGACTACG   1636

BSNT_02672___   1637 GGAAATTAACAACAGATTCTGATCTTTTGACAGAGTATACAAGACAAGCG   1686
                     |.||..|.||.||.|||||.|||.|..||||.||||||...|||||.||.
BL01254___flh   1637 GAAAGCTGACGACGGATTCAGATATGCTGACCGAGTATGTCAGACAGGCT   1686

BSNT_02672___   1687 CTTGCTAAACAAATTACAGCACAGTTTGCCAAAGAAAATGAAGTGTTGAA   1736
                     ||.||.||.||.||.||.||.||.|.|||.||.||||||||...|.||||
BL01254___flh   1687 CTGGCCAAGCAGATCACCGCCCAATATGCGAAGGAAAATGAGACGCTGAA   1736

BSNT_02672___   1737 GGTTGTTACTTGTTCGGGCCGTGTAGAAAAGGCAATAGCAGACGGTGTGC   1786
                     .||.||.||||||||||||||.||.||||||||..|.||.||.||..|.|
BL01254___flh   1737 AGTGGTGACTTGTTCGGGCCGCGTCGAAAAGGCCGTGGCGGAAGGAATTC   1786

BSNT_02672___   1787 AGCAGACGGAACACGGGAACTATTTATCACTTGAACCAGATATT-TCAGA   1835
                     |||||||.||||||||.||||.||||||.||||||||| |.||| ||.||
BL01254___flh   1787 AGCAGACTGAACACGGCAACTTTTTATCTCTTGAACCA-ACATTATCCGA   1835

BSNT_02672___   1836 AAGTATAGTGCGCTCTGTCGCTAAAGAAGCTGAACAGCTCTCATTACGTC   1885
                     ||.|||..|.|..|||||.||.|.||||...||||||||||||||..|.|
BL01254___flh   1836 AAATATCATTCAATCTGTAGCAAGAGAAATCGAACAGCTCTCATTGAGGC   1885

BSNT_02672___   1886 AGGAAACCGCGATTCTTCTTTGCTCGCCGCCTGTCAGAATGTATGTGAAG   1935
                     |||||....||||.|||||.||.|||||||||||||||||||||||.|||
BL01254___flh   1886 AGGAAGTGCCGATCCTTCTATGTTCGCCGCCTGTCAGAATGTATGTCAAG   1935

BSNT_02672___   1936 CAGCTTCTGGAACGGTACTTCCCTGATCTTCCGGTACTCTCTTATAACGA   1985
                     |||||.||.||.||.||.|||||||||||.|||||.||.||.||||||||
BL01254___flh   1936 CAGCTGCTTGAGCGCTATTTCCCTGATCTGCCGGTTCTTTCCTATAACGA   1985

BSNT_02672___   1986 ACTTGAGGCGAATGTTGAGGTACAAAGCATTGGAGTGGTGGATATTTAA-   2034
                     |.|.||.||.|||||.||.||.||||||||.|||||||||||||||.|| 
BL01254___flh   1986 ATTGGAAGCCAATGTAGAAGTTCAAAGCATCGGAGTGGTGGATATTCAAT   2035

BSNT_02672___   2034 --   2034
                       
BL01254___flh   2036 GA   2037


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