Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02670 and BL01256

See Amino acid alignment / Visit BSNT_02670 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_02670.1.5803.seq
#    -bsequence dna-align/BL01256___fliR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02670-BL01256___fliR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02670-BL01256___fliR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02670
# 2: BL01256___fliR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity:     424/788 (53.8%)
# Similarity:   424/788 (53.8%)
# Gaps:         214/788 (27.2%)
# Score: 1404.5
# 
#
#=======================================

BSNT_02670         0 --------------------------------------------------      0
                                                                       
BL01256___fli      1 ATGTCAATAATCGAATCATTTCCAGCCTTTTTACTTGTGTTTGTCAGAAT     50

BSNT_02670         0 --------------------------------------------------      0
                                                                       
BL01256___fli     51 CACAGCATTCTATGTAACGGTGCCTCTATTTTCTTATCGGACAATTCCGG    100

BSNT_02670         0 --------------------------------------------------      0
                                                                       
BL01256___fli    101 CCGTTCATAAAATAGGTTTTGCATTTTTTCTTGCGCTCGTCAGTTTTCAA    150

BSNT_02670         1 ------------------------------------------ATGCTTTT      8
                                                               |||.|.||
BL01256___fli    151 GCGATTGAAAAGCCTCCTCACCTTGACGTTGACGGAATTTACATGATGTT    200

BSNT_02670         9 GGCGTTTAAAGAAGCTTTGGTCGGCCTATGTCTG---GGTTTAATTGCTT     55
                     |||..|.||.|||||..|..||||.||   ||||   ||..|.||.||||
BL01256___fli    201 GGCCATGAAGGAAGCGCTCATCGGACT---TCTGCTTGGGCTGATCGCTT    247

BSNT_02670        56 ATATGATGATTGCCGCAGTGCAGATTGCCGGCTCGTTTATTGATTTTCAA    105
                     |.||||||||..|.||.||.||.||.|||||.|||||.||||||||||||
BL01256___fli    248 ACATGATGATCTCAGCCGTTCAAATCGCCGGATCGTTCATTGATTTTCAA    297

BSNT_02670       106 ATGGGATTTTCAATAGCAAACGTTATTGATCCGCAAACCGGTGCACAAAG    155
                     |||||||||.|..|.||.||.||.||.|||||.||.||.||.||.|||||
BL01256___fli    298 ATGGGATTTGCGGTGGCGAATGTGATCGATCCACAGACAGGGGCGCAAAG    347

BSNT_02670       156 TCCG-TTGATTGGCCAGTTTATCTATACGATGGCACTTTTGTTTATGCTG    204
                     .||| ||| |.|||||||||.|.|||||||||||.||..|..|.||||||
BL01256___fli    348 CCCGCTTG-TCGGCCAGTTTTTATATACGATGGCGCTGCTTCTCATGCTG    396

BSNT_02670       205 AGTGTCAATGCCCACCATTTGTTGCTGGATGGTATTTACTACAGCTTTCA    254
                     ||..|.|||||.||.|||.|..||||.||.||.||.||.|||||||.|||
BL01256___fli    397 AGCCTGAATGCGCATCATCTCCTGCTTGACGGGATCTATTACAGCTATCA    446

BSNT_02670       255 GTATATTTCAGTTGATCA----GGCATTTCCGAATTTCG--GCGATGAAA    298
                     .||.|||.|.||.|| ||    |||..|..||  |||.|  ||||.||| 
BL01256___fli    447 ATACATTCCGGTCGA-CAAGATGGCGCTGTCG--TTTGGAAGCGAAGAA-    492

BSNT_02670       299 AGTTTGCCTATTTTATTGCGAAAAGCTTTAATGCAATGTTTATTATCGCT    348
                       ||||||.|.|||||.||.||||||||.|||.|.||||||||||..||.
BL01256___fli    493 --TTTGCCGAGTTTATCGCAAAAAGCTTCAATACGATGTTTATTACAGCA    540

BSNT_02670       349 TTTCAAATGTCAGCGCCGGTTGTGGCCAGCTTGTTTCTAGTTGATTTAGC    398
                     ||||||.||||.|||||.||||||||..|.||||||.||||.|||.|.||
BL01256___fli    541 TTTCAATTGTCTGCGCCTGTTGTGGCTTGTTTGTTTTTAGTCGATCTGGC    590

BSNT_02670       399 ATTAGGCATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCG    448
                     |||.||.||.|||||..||||.||.||||||.|.||.||.|||||.||||
BL01256___fli    591 ATTGGGGATTGTGGCGAGAACGGTGCCGCAGCTCAACGTGTTTGTCGTCG    640

BSNT_02670       449 GTCTCCCTTTAAAGATCGCTGTCAGTTTCATCATGCTCATTGTATGTATG    498
                     |.||.|||||.||.|||||..|||..||.|||||||||||..|.||.|||
BL01256___fli    641 GGCTTCCTTTGAAAATCGCGATCACCTTTATCATGCTCATCATCTGCATG    690

BSNT_02670       499 TCCGTTATCTTCGTCGTTGTCCGGAATGTTTTC-AGTTTAACGATTGAAA    547
                     .|||||||.|||..|.|..|.|.|.|.||.||| |.||| .|.|||...|
BL01256___fli    691 GCCGTTATGTTCAGCATGATGCAGCACGTCTTCGAATTT-GCCATTCGGA    739

BSNT_02670       548 CGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAA    585
                     |.|||.|..||||.|||.|.|||.|.||.||..|.|.|
BL01256___fli    740 CAATGAGAGATCTATTAACTTTGCTTGGGGTGGCATGA    777


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