Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02666 and BL01258

See Amino acid alignment / Visit BSNT_02666 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_02666___fliP.1.5803.seq
#    -bsequence dna-align/BL01258___fliP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02666___fliP-BL01258___fliP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02666___fliP-BL01258___fliP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02666___fliP
# 2: BL01258___fliP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity:     524/675 (77.6%)
# Similarity:   524/675 (77.6%)
# Gaps:          18/675 ( 2.7%)
# Score: 2031.5
# 
#
#=======================================

BSNT_02666___      1 ATGAATGAGTTTATAAATATTTTCAGTTCAAGCGATCCGGAAAACGTAA-     49
                     ||||||||||||||..||.|.||.|.||||||||||.|||.|||.||.| 
BL01258___fli      1 ATGAATGAGTTTATGGATTTATTTAATTCAAGCGATGCGGCAAATGTCAG     50

BSNT_02666___     50 -------GTTCGACTGTTAAATTACTATTATTGTTAACTGTATTTTCAGT     92
                            ||.||.||     .||.||..|.|||   ||.||||||||..|
BL01258___fli     51 CGCCAGCGTCCGGCT-----CTTGCTGCTTTTG---ACAGTATTTTCGAT     92

BSNT_02666___     93 GGCGCCTGGAATATTGATTCTT-ATGACTTGTTTTACTCGCATCGTCATT    141
                     .||.||.||.||.|||| |||| |||||||||||.||..|..|.|||||.
BL01258___fli     93 CGCTCCGGGTATCTTGA-TCTTGATGACTTGTTTCACAAGGGTTGTCATC    141

BSNT_02666___    142 GTTCTGTCATTTGTCAGAACTTCACTTGCGACGCAATCTATGCCCCCAAA    191
                     ||.|||||.||||||.|.||.||.||.||.||.||.||.|||||||||||
BL01258___fli    142 GTCCTGTCCTTTGTCCGGACATCGCTGGCAACACAGTCAATGCCCCCAAA    191

BSNT_02666___    192 CCAGGTTCTTATCGGGCTTGCGCTGTTTTTAACATTTTTTATCATGGCTC    241
                     ||||||.||.|||||.|||||.|||||..|.||||||||.||.||||..|
BL01258___fli    192 CCAGGTGCTGATCGGACTTGCACTGTTCCTGACATTTTTCATTATGGGGC    241

BSNT_02666___    242 CTACTTTTTCAGAAATTAATAAAGAAGCGCTGACCCCATTAATGGACAAC    291
                     |.|||||||||||.||||||||||||||||||||.||.||||||.||||.
BL01258___fli    242 CGACTTTTTCAGAGATTAATAAAGAAGCGCTGACGCCTTTAATGAACAAT    291

BSNT_02666___    292 AAAATCAGCTTGGATGAAGCGTATACGAAAGCTGAGGAACCGATTAAAGA    341
                     |||||||.||||||||||||.|||||.|||||.||.|..|||||.|||..
BL01258___fli    292 AAAATCACCTTGGATGAAGCTTATACAAAAGCGGAAGCCCCGATCAAAAC    341

BSNT_02666___    342 ATTTATGAGTAAACACACAAGGCAGAAGGATCTGGCGCTGTTTATGAATT    391
                     |||||||||.||.||.|||||.|||||.||||||||..|.||||||||||
BL01258___fli    342 ATTTATGAGCAAGCATACAAGACAGAAAGATCTGGCTTTATTTATGAATT    391

BSNT_02666___    392 ACGCGAAAATGGATAAACCTGAATCATTAAAGGATATTCCGTTAACAACA    441
                     ||||.||.|||||.|..|||||.||..|.||.|||||||||.|..||||.
BL01258___fli    392 ACGCAAAGATGGAAACGCCTGAGTCCATCAATGATATTCCGCTTTCAACT    441

BSNT_02666___    442 ATGGTTCCGGCTTTTGCCATATCGGAGCTTAAAACAGCATTTCAAATAGG    491
                     ||||||||.||.||||.|||.|||||..|.|||||.||.||||||||.||
BL01258___fli    442 ATGGTTCCTGCGTTTGTCATCTCGGAATTGAAAACCGCGTTTCAAATGGG    491

BSNT_02666___    492 TTTTATGATTTTTATCCCTTTTTTAATTATAGATATGGTAGTGGCGAGCG    541
                     .||||||||.|||||.||.|||.|.|||||.||||||||.|||||.||.|
BL01258___fli    492 ATTTATGATATTTATACCGTTTCTGATTATCGATATGGTTGTGGCAAGTG    541

BSNT_02666___    542 TCTTGATGTCAATGGGAATGATGATGCTGCCTCCAGTTATGATTTCTCTG    591
                     |.||||||||.|||||.|||||||||||.||.||.||.||||||||.|||
BL01258___fli    542 TTTTGATGTCGATGGGGATGATGATGCTTCCGCCGGTCATGATTTCACTG    591

BSNT_02666___    592 CCCTTTAAAATATTACTTTTTGTTTTGGTAGACGGCTGGTATTTAATTGT    641
                     ||.|||||.||.||.||.|||||..|.|||||.||||||||||||||.||
BL01258___fli    592 CCGTTTAAGATTTTGCTGTTTGTGCTTGTAGATGGCTGGTATTTAATCGT    641

BSNT_02666___    642 GAAATCTTTGCTTCAGAGCTTTTAG    666
                     .|||||||||||.||.|||||||||
BL01258___fli    642 TAAATCTTTGCTGCAAAGCTTTTAG    666


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.