Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02650 and BL01267
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_02650___ylxF.1.5803.seq
# -bsequence dna-align/BL01267___ylxF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02650___ylxF-BL01267___ylxF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02650___ylxF-BL01267___ylxF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02650___ylxF
# 2: BL01267___ylxF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 694
# Identity: 396/694 (57.1%)
# Similarity: 396/694 (57.1%)
# Gaps: 161/694 (23.2%)
# Score: 1028.5
#
#
#=======================================
BSNT_02650___ 1 ATGTCCGGCAAAAAGAAAGAATCAGGTAAGTTCCGTTCGG----TTTTGC 46
|||.||| ||.|.|||.||.|.|||||.| |||.| |||||.
BL01267___ylx 1 ATGACCG---AAGAAAAAAAAGCCGGTAAAT----TTCAGACATTTTTGT 43
BSNT_02650___ 47 TTATCATTATCCTCCCGCTGATGTTTCTATTAATC---GCAGGG------ 87
||.||||..||.|.||||||||.||| |||||| |.||.|
BL01267___ylx 44 TTGTCATCGTCATTCCGCTGATCTTT---TTAATCGTTGTAGCGTTCGTC 90
BSNT_02650___ 88 GGGAT-TGTTCTTTGGGCTGCTGGTATCAATGTCATAAAGCCGATACAGG 136
||.|| ||...||||||| .||||| .|.||||
BL01267___ylx 91 GGCATGTGGCTTTTGGGC-------GTCAAT------------TTTCAGG 121
BSNT_02650___ 137 ATGCTGCGGCAAAAACGCCGGTTCTTAAAGA-ATTGGTCCCTGAAACCGA 185
||||.||..||||||..||.||..|.||||| .||| ||
BL01267___ylx 122 ATGCAGCCTCAAAAATTCCCGTCGTAAAAGAGCTTG-----TG------- 159
BSNT_02650___ 186 AAATAAAAAAGGCG-----CAG--CAT--------CAAGTA------AGG 214
|||||.|||| ||| ||| |||.|| |||
BL01267___ylx 160 ----AAAAACGGCGAGGATCAGGACATAGATCACGCAACTAAACAGCAGG 205
BSNT_02650___ 215 -----ATAGCAGTAATACGGCAGCTCTGGAAAAGACCATTAAGGATCAAA 259
|.|||||.|| ||||| .|||||||.||..|.||.||||
BL01267___ylx 206 AGAACAAAGCAGAAA------AGCTC--CAAAAGACGATCGATGAACAAA 247
BSNT_02650___ 260 AAAGTGAAATCAGTATATTGAATAAAGATTTAGAAACAAGTAAATC-AGA 308
||||.||||||...|...|||..|..||.|||.||||.||| .||| |||
BL01267___ylx 248 AAAGCGAAATCGAAACGCTGACGAGTGACTTAAAAACGAGT-GATCAAGA 296
BSNT_02650___ 309 AATCGATAGGCTCAATCAAAAGATCCGTTCACTTGAAAAGACGGCTGAGG 358
.||..|.|||||.||.|||||.|||.|.||.||.|||||.||||...|.|
BL01267___ylx 297 GATTAAAAGGCTGAAACAAAAAATCAGCTCGCTCGAAAAAACGGAAAAAG 346
BSNT_02650___ 359 ATCAAAAAAAGTC---ATCAGAAGATCATACTGAAGGATC-AGCAGACTC 404
||.|||||.|| | ||.|.|||| |..|.||||| || ||.||||..
BL01267___ylx 347 ATGAAAAAGAG-CAGGATAAAAAGA--ACGCCGAAGG-TCAAGGAGACGG 392
BSNT_02650___ 405 GAAAGCTTCTTCTGAAAATGACAAAGTGATCAGTGTGTACAAAAGCATGG 454
.|||| ||.|| |||| |.||..||||||||.
BL01267___ylx 393 AAAAG--TCGTC--AAAA-----------------TTTATGAAAGCATGC 421
BSNT_02650___ 455 ACAGCGGAAAGGCTGCTAAAATTATTGCCCAATTAAAGGAGCAAGAAGCA 504
|.|||...||.|||||.||||||.|...|.|||||||.|||.||||.|||
BL01267___ylx 422 AAAGCAATAAAGCTGCAAAAATTTTAAGCGAATTAAAAGAGGAAGAGGCA 471
BSNT_02650___ 505 CTGAAAATATTGAATGGCCTAAGCAAAAAGCAGCTTGCTGACATATTGGC 554
.|.||.||.||..||....|||||||||||.|..|..||||.||..|..|
BL01267___ylx 472 ATCAATATTTTAGATTCTTTAAGCAAAAAGAAAGTGACTGAGATCCTCTC 521
BSNT_02650___ 555 GAAAATGACTCCTGAGCAAGCAGCAACCTAT--ACAGAAAAAATTGCTG- 601
.||||||.|||||||..||||.|| ..||| ||||||||..||| ||
BL01267___ylx 522 AAAAATGTCTCCTGATAAAGCGGC--TGTATTCACAGAAAAGCTTG-TGA 568
BSNT_02650___ 602 -----------------CCAGCCAA-------------GAATAG 615
..|||.|| ||||||
BL01267___ylx 569 AAAACGAGGCGAAAAACGAAGCGAAAAAAGAAGGGGGGGAATAG 612
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