Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02646 and BL01270

See Amino acid alignment / Visit BSNT_02646 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:21
# Commandline: needle
#    -asequence dna-align/BSNT_02646.1.5803.seq
#    -bsequence dna-align/BL01270___fliH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02646-BL01270___fliH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02646-BL01270___fliH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02646
# 2: BL01270___fliH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity:     493/871 (56.6%)
# Similarity:   493/871 (56.6%)
# Gaps:         230/871 (26.4%)
# Score: 1275.5
# 
#
#=======================================

BSNT_02646         1 TTGTCTAATATCATTAAACA---AGAATCATCTATTTCTCCACAAAAGGA     47
                     ||||||||.||.||||||||   |..||||||.||          |..||
BL01270___fli      1 TTGTCTAACATTATTAAACAGCGATTATCATCAAT----------ACCGA     40

BSNT_02646        48 AAAAAGAAA-----AC--TTTCTATACAAGAGGTGCGTATTGATCATTCT     90
                     |||||||||     ||  ||||..||.|.||.|          |||    
BL01270___fli     41 AAAAAGAAAGGCGGACGATTTCATTAAAGGAAG----------TCA----     76

BSNT_02646        91 CACCTTTTGCAGGCTGA-AGAGAACTCGGAGGCGCTTATGGCCCGAGTGA    139
                      |.|||      .|||| |.||||..||.|    ||           |||
BL01270___fli     77 -AACTT------CCTGAGACAGAAACCGAA----CT-----------TGA    104

BSNT_02646       140 AAGAGGA-AGCTGA-CCGGATT------TCTGAGCAGGCAAACAGTCATA    181
                     .|..||| ||  || |||||.|      || ||.||.||   |||.||..
BL01270___fli    105 TACCGGACAG--GATCCGGAATACCTCCTC-GACCATGC---CAGACAAG    148

BSNT_02646       182 TAG-----AAAATATTC----------GCCGTCAAATCGAGCAGG--AGA    214
                     .||     |||||||.|          ||..|.||.||||.||||  |||
BL01270___fli    149 AAGCCGGAAAAATATACGAAAAAGCGAGCGCTGAACTCGAACAGGTCAGA    198

BSNT_02646       215 ----AAAACGATTGGG--CG-----GCTGAAAAACAGAA--------GCT    245
                         |||.|||...||  ||     ||||..||||||||        |||
BL01270___fli    199 CGGCAAATCGAAGAGGAACGGTCAAGCTGGGAAACAGAACGCGAAGCGCT    248

BSNT_02646       246 TATTGAAGAAGCAAAAACCGAGGGCTTTGAACAAGGAGTAGCGTTGGGCA    295
                     .||.||..|.||.|||...||.||||||.||...|||.|.|....|||.|
BL01270___fli    249 GATAGACCAGGCGAAACAAGAAGGCTTTCAAGCTGGATTTGAAGAGGGAA    298

BSNT_02646       296 AAGCTGAGGCATTGCAACAGTATGCCGAA---CTGATCGGCCAAGCGAAC    342
                     |.||.|||||              |||||   ||.||    |||||    
BL01270___fli    299 AGGCCGAGGC--------------CCGAAGCGCTTAT----CAAGC----    326

BSNT_02646       343 AGTAT----AACTGAA---------AT-GTCCAGAAAAGCTGTTGAG---    375
                      ||||    |  ||||         || ||||.|    ||.|.| ||   
BL01270___fli    327 -GTATTTGGA--TGAAGCCAATGCCATCGTCCGG----GCGGCT-AGACG    368

BSNT_02646       376 -GACAAGCTTGAAGA------CG--CTAAT-----GAAGAAATCGTTGAG    411
                      |||.|   ||||||      ||  | |||     ||||||||.||.||.
BL01270___fli    369 TGACTA---TGAAGAAAAAATCGAAC-AATCATCCGAAGAAATTGTCGAA    414

BSNT_02646       412 CTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAA    461
                     ||||||||..|.||.||.||||||||||||.|.||||||.||||.||.||
BL01270___fli    415 CTTGCCGTGTCACTGGCTAAAAAAGTTTGGAATCAAAAGGCTGACGACAA    464

BSNT_02646       462 AGAGGCTTT------CCTCCTGCTTGTACAACAGGTTATAAACGAAGTGA    505
                     |||.|||||      ||||      |||.|||||||..|....|||.|||
BL01270___fli    465 AGAAGCTTTTACAGCCCTC------GTAAAACAGGTGCTGTCGGAAATGA    508

BSNT_02646       506 AGGAATATGACGATATATCAATTTATGTTGATCCATATTACTA---TGAG    552
                     ||||||..||.||.||..|.||.|||||.|||||..|.|||||   .|||
BL01270___fli    509 AGGAATTCGATGACATTGCCATCTATGTAGATCCGGAGTACTACACCGAG    558

BSNT_02646       553 ACAATCTTTCA---GCAAAAAGATGAAATCCAGCAGCTTCT-TTATAAAG    598
                           .||||   .||.|||.|.|||.|..|||||||.|| ..|||   
BL01270___fli    559 ------GTTCAAAGCCACAAAAACGAACTTGAGCAGCTCCTCCAATA---    599

BSNT_02646       599 AATGCCGGC-------TTGGCATATATGCTGATGAAAAAGCTCAAAAAGG    641
                          ||||       |.|..|||||.||.|||||||||||.|..|||||
BL01270___fli    600 -----CGGCGCCCATATCGCGATATACGCCGATGAAAAAGCGCCGAAAGG    644

BSNT_02646       642 AACCTGTTATATTGAAACTCCTTTTGGCAGGGTAGATGCGAGTGTTGACA    691
                     |||.||.|||.|||||||..||||.||.||..|.|||||..|..|.||||
BL01270___fli    645 AACGTGCTATGTTGAAACGGCTTTCGGAAGAATCGATGCAGGCATCGACA    694

BSNT_02646       692 CACAATTGATGCAATTGAAAGATAAACTTCTGACAGC--GCTGGAA---G    736
                     |.||||||..|||..|||||.|.|||||.||  ||||  |||.|||   |
BL01270___fli    695 CTCAATTGCAGCAGCTGAAACAAAAACTGCT--CAGCCTGCTTGAAACGG    742

BSNT_02646       737 CAGGTG----CAGCTGAATGA    753
                     ||||||    |.|.|||    
BL01270___fli    743 CAGGTGTTGTCCGGTGA----    759


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