Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02631 and BL01281

See Amino acid alignment / Visit BSNT_02631 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_02631___topA.1.5803.seq
#    -bsequence dna-align/BL01281___topA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02631___topA-BL01281___topA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02631___topA-BL01281___topA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02631___topA
# 2: BL01281___topA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2091
# Identity:    1641/2091 (78.5%)
# Similarity:  1641/2091 (78.5%)
# Gaps:          30/2091 ( 1.4%)
# Score: 6358.0
# 
#
#=======================================

BSNT_02631___      1 ATGTCTGATTATCTAGTCATCGTGGAATCGCCCGCTAAGGCGAAAACGAT     50
                     |||||.||.||..|||||||||||||||||||.||.|||||.||||||||
BL01281___top      1 ATGTCCGAATACTTAGTCATCGTGGAATCGCCTGCAAAGGCAAAAACGAT     50

BSNT_02631___     51 TGAACGTTACTTAGGTAAAAAATATAAAGTAAAAGCATCAATGGGACATG    100
                     |||.||.||||||||.||||||||||||||||||||.||.|||||.||.|
BL01281___top     51 TGAGCGATACTTAGGAAAAAAATATAAAGTAAAAGCCTCGATGGGGCACG    100

BSNT_02631___    101 TCCGGGATCTTCCAAAAAGTCAAATGGGAGTTGACATAGAACAGAATTTT    150
                     ||.|.|||.|.||.|||||.||.|||||.||||||||.||.|||||.|||
BL01281___top    101 TCAGAGATTTGCCGAAAAGCCAGATGGGCGTTGACATCGAGCAGAACTTT    150

BSNT_02631___    151 GAACCGAAATATATTACCATTCGAGGTAAAGGTCCGGTATTAAAAGAGCT    200
                     |||||.|||||.|||||.||.||.||.|||||.||.||.||.|||||..|
BL01281___top    151 GAACCAAAATACATTACGATCCGCGGGAAAGGCCCCGTGTTGAAAGAATT    200

BSNT_02631___    201 GAAAACGGCAGCGAAAAAAGCCAAAAAAGTGTATCTCGCAGCCGACCCCG    250
                     .||||||||.||.|||||.||.||||||||.|||||||||||||||||||
BL01281___top    201 AAAAACGGCCGCCAAAAAGGCAAAAAAAGTTTATCTCGCAGCCGACCCCG    250

BSNT_02631___    251 ACAGAGAAGGGGAAGCGATTGCATGGCATTTGGCACACAGTCTTGATTTA    300
                     ||||.|||||||||||||||||.|||||||||||.|||||.||||||||.
BL01281___top    251 ACAGGGAAGGGGAAGCGATTGCGTGGCATTTGGCGCACAGCCTTGATTTG    300

BSNT_02631___    301 GATCTCAACTCAGACTGCCGTGTGGTGTTTAACGAAATTACAAAAGACGC    350
                     ||.||.||.||.||||||||.||.||.|||||.||||||||||||||.||
BL01281___top    301 GACCTGAATTCCGACTGCCGCGTCGTATTTAATGAAATTACAAAAGATGC    350

BSNT_02631___    351 TATTAAGGAATCGTTTAAGCATCCCCGCATGATCAATATGGATTTAGTGG    400
                     .||.||.|||||.|||||||||||.||||||||||||||||||.|.||.|
BL01281___top    351 GATCAAAGAATCATTTAAGCATCCGCGCATGATCAATATGGATCTTGTCG    400

BSNT_02631___    401 ATGCACAGCAAGCGAGACGTATTTTAGACAGGCTTGTCGGATATAAAATC    450
                     |.||.|||||.||||||.|.|||.|.|||.|.|||||.||.||.||||||
BL01281___top    401 ACGCCCAGCAGGCGAGAAGAATTCTGGACCGCCTTGTAGGGTACAAAATC    450

BSNT_02631___    451 AGTCCAATCTTATGGAAAAAAGTCAAAAAAGGGCTT-AGCGCAGGACGCG    499
                     |||||.||.|||||||||||||| ||||||.||||| ||.||.|||||.|
BL01281___top    451 AGTCCGATATTATGGAAAAAAGT-AAAAAAAGGCTTGAGTGCGGGACGTG    499

BSNT_02631___    500 TGCAATCCGTTGCCCTCCGTTTGATTATTGACCGTGAAAAAGAGATTAAC    549
                     |.|||||.|||||.|||||..|.||.||||||||.||.|||||.||.|||
BL01281___top    500 TCCAATCTGTTGCGCTCCGCCTTATCATTGACCGGGAGAAAGAAATCAAC    549

BSNT_02631___    550 GACTTTAAGCCCGAGGAATATTGGACAATTGACGGTACGTTCTTAAAAGG    599
                     ||.||||..||.||.|||||||||||||||||.||..|.||..|.|||||
BL01281___top    550 GATTTTATACCGGAAGAATATTGGACAATTGAAGGGTCTTTTCTCAAAGG    599

BSNT_02631___    600 TCAAGAAACCTTTGAAGCGAGCTTTTTCGGGAAAAACGGCAAAAAACTTC    649
                     |.|||||||.||||||||||||||.|||||.|..|||||..||||.|..|
BL01281___top    600 TAAAGAAACGTTTGAAGCGAGCTTCTTCGGAATCAACGGGGAAAAGCACC    649

BSNT_02631___    650 CTTTAAATAGTGAAGCTGATGTAAAAGAGATTCTTTCTCAGCTCAAAGGG    699
                     ...|.||.||.||||.||||||.||..|.||.||.||.|.|.||||||||
BL01281___top    650 AGCTGAAAAGCGAAGATGATGTGAAGCAAATCCTATCCCGGATCAAAGGG    699

BSNT_02631___    700 AATCAATATACAGTTGAAAAA-GTAACCAAAAAGGAACGCAAACGTAATC    748
                     || |||..|..||.|.||||| |||||.|||||.|||||.||.||.||||
BL01281___top    700 AA-CAAATTTGAGGTCAAAAAGGTAACGAAAAAAGAACGGAAGCGAAATC    748

BSNT_02631___    749 CCGCTTTGCCTTTTACCACTTCTACCCTGCAGCAGGAAGCGGCTCGCAAG    798
                     |.||..|.||.|||||.||.||.||.||.||||||||||||||.|||||.
BL01281___top    749 CTGCGCTCCCATTTACGACGTCGACGCTTCAGCAGGAAGCGGCGCGCAAA    798

BSNT_02631___    799 CTCAATTTCAGAGCGAAGAAAACGATGATGATTGCACAGCAATTATATGA    848
                     .|.||||||.|.||.|||||||||||||||||.||.|||||..|.|||||
BL01281___top    799 TTGAATTTCCGGGCAAAGAAAACGATGATGATCGCCCAGCAGCTTTATGA    848

BSNT_02631___    849 AGGAATTGATTTAGGAAGAGAAGGAACGGTTGGTCTGATCACGTATATGA    898
                     ||||||.|||.|.||.|.||||||||||||.||..|.|||||.|||||||
BL01281___top    849 AGGAATCGATCTCGGCAAAGAAGGAACGGTCGGGTTAATCACTTATATGA    898

BSNT_02631___    899 GAACGGATTCAACCCGTATTTCAAATACGGCTGTTGATGAAGCAGCTGCA    948
                     |||||||||||||||||||.||.||||   |||.|.|.||||.|||.|||
BL01281___top    899 GAACGGATTCAACCCGTATCTCGAATA---CTGCTCAAGAAGAAGCGGCA    945

BSNT_02631___    949 TTTATTGATCAG---ACA-TATGGAAAAGAGTTCCTAGGCGGAAAACGGA    994
                      |.|||.|||.|   ||| ||.||||||||.||..|.||..|.||.||.|
BL01281___top    946 -TCATTCATCGGCGAACAGTACGGAAAAGAATTTTTGGGTAGCAAGCGAA    994

BSNT_02631___    995 AGCCTGCGAAAAAGAATGAAAATGCCCAGGATGCCCACGAAGCAATTCGG   1044
                     ||||.||.||||||||||||||.||||||||||||||||||||.||..||
BL01281___top    995 AGCCGGCCAAAAAGAATGAAAACGCCCAGGATGCCCACGAAGCGATCAGG   1044

BSNT_02631___   1045 CCGACATCAGTTCTTAGAAAACCAAGTGAATTAAAAGCAGTCCTCGGCAG   1094
                     |||||.||.||.||.|||||.||....||..|.||.||.||..|.||.||
BL01281___top   1045 CCGACCTCGGTGCTCAGAAAGCCTTCCGATCTGAAGGCGGTATTGGGAAG   1094

BSNT_02631___   1095 AGACCAAATGAGACTGTATAAATTAATTTGGGAGCGTTTTGTTGCCAGCC   1144
                     ||||||..|..|.||.||.||..|.||.||||||||.|||||.||.||||
BL01281___top   1095 AGACCAGCTTCGGCTATACAAGCTGATCTGGGAGCGCTTTGTCGCAAGCC   1144

BSNT_02631___   1145 AAATGGCATCGGCTGTTCTCGATACAATGAGTGTCGACC-TGACAAACAA   1193
                     |||||||..||||....||.|||||.|||||.||||||| ||| ||||||
BL01281___top   1145 AAATGGCTCCGGCGACACTGGATACGATGAGCGTCGACCTTGA-AAACAA   1193

BSNT_02631___   1194 CGGTTTGACATTTCGTGCAAATGGAAGTAAAGTCAAGTTTTCCGGGTTTA   1243
                     |||.|||||||||||.|||||.||.|||||||||||||||||.||.||.|
BL01281___top   1194 CGGGTTGACATTTCGGGCAAACGGCAGTAAAGTCAAGTTTTCAGGCTTCA   1243

BSNT_02631___   1244 TGAAGGTGTATGTTGAAGGAAAAGACGATCAAATGGAAGAAAAAGACCGG   1293
                     ||||.|||||.||||||||.|||||||||||.||||||||.||..|...|
BL01281___top   1244 TGAAAGTGTACGTTGAAGGCAAAGACGATCAGATGGAAGAGAAGAATAAG   1293

BSNT_02631___   1294 ATGCTGCCTGA-----CTTACAAGAAGGCGACACGGTATTATCAAAAGAT   1338
                     |||||.||.||     ||     ||||||||.||.||..|.||||||||.
BL01281___top   1294 ATGCTTCCGGATCTCGCT-----GAAGGCGATACCGTGCTTTCAAAAGAC   1338

BSNT_02631___   1339 ATAGAACCTGAGCAGCATTTTACCCAGCCGCCTCCGCGATATACTGAGGC   1388
                     ||.||.||.||.|||||.||.||.||||||||||||||.|||||.||.||
BL01281___top   1339 ATCGAGCCCGAACAGCACTTCACACAGCCGCCTCCGCGCTATACGGAAGC   1388

BSNT_02631___   1389 CCGGCTCGTTAAAACCCTTGAAGAACGCGGTATCGGCCGTCCATCCACAT   1438
                     ..||||.||.|||||.||||||||||..||.|||||.|||||||||||||
BL01281___top   1389 AAGGCTGGTCAAAACGCTTGAAGAACTGGGAATCGGACGTCCATCCACAT   1438

BSNT_02631___   1439 ATGCTCCGACACTTGATACTATTCAGCGTCGCGGCTACGTGGCATTGGAT   1488
                     |.||.|||||.|||||.||.||.||....|||||.||.||.||..|.|||
BL01281___top   1439 ACGCGCCGACGCTTGACACGATCCAAAAGCGCGGGTATGTCGCCCTTGAT   1488

BSNT_02631___   1489 AATAAACGTTTCGTTCCGACTGAATTAGGTCAGATCGTTCTTGACTTGAT   1538
                     ||||||||.||..||||||||||..|.|||.|.||.||.|||||||||||
BL01281___top   1489 AATAAACGCTTTATTCCGACTGAGCTCGGTGAAATTGTGCTTGACTTGAT   1538

BSNT_02631___   1539 CATGGAGTTTTTCCCTGAGATCATTAACGTTGAGTTTACAGCTAAAATGG   1588
                     |||||||||||||||||||||.||||||||||||||.||.||.|||||||
BL01281___top   1539 CATGGAGTTTTTCCCTGAGATTATTAACGTTGAGTTCACCGCCAAAATGG   1588

BSNT_02631___   1589 AGAGAGATCTTGATCATGTTGAAGAAGGCAATACTGAATGGGTCAAAATT   1638
                     |.|.|||.||||||.|.||||||||.||.||.|.|.|||||||..|.||.
BL01281___top   1589 AAAAAGAGCTTGATGACGTTGAAGACGGAAACATTCAATGGGTGCAGATC   1638

BSNT_02631___   1639 ATTGATAATTTCTACACCGATTTTGAAAAACGCGTCAAAAAAGCCGAATC   1688
                     ||.|||...||.||||..||.||||||||.||.||..|||||||.|||.|
BL01281___top   1639 ATCGATTCCTTTTACAAGGACTTTGAAAAGCGTGTTGAAAAAGCGGAAGC   1688

BSNT_02631___   1689 GGAAATGAAGGAAGTTGAGATTGAACCAGAGTATGCTGGAGAGGATTGTG   1738
                     .||.|||.|||||||.|||||.|||||.||||||||.||.|..||.||||
BL01281___top   1689 CGAGATGCAGGAAGTGGAGATCGAACCGGAGTATGCAGGTGTTGACTGTG   1738

BSNT_02631___   1739 AATTGTGCAGTTCTCCAATGGTATATAAAATGGGACGGTACGGTAAATTC   1788
                     ||..||||.|...|||.|||||.|||||||||||.||||||||.|||||.
BL01281___top   1739 AAGCGTGCGGACATCCGATGGTCTATAAAATGGGCCGGTACGGCAAATTT   1788

BSNT_02631___   1789 TTAGCTTGCTCCAACTTCCCTGACTGCCGGAACACGAAACCGATTGTGAA   1838
                     .|.||.||||||||.||.||.||||||||.|||||.||.|||||.||.||
BL01281___top   1789 ATGGCCTGCTCCAATTTTCCGGACTGCCGCAACACCAAGCCGATCGTAAA   1838

BSNT_02631___   1839 ACAAATCGGTGTGAAGTGCCCGAGC-TGCGGAGAA--GGAAACATTGTTG   1885
                     |.|.|||||.||.||.||||| |.| |||  |.||  ||.|||||.||.|
BL01281___top   1839 AGAGATCGGCGTCAAATGCCC-ATCATGC--AAAACCGGCAACATCGTCG   1885

BSNT_02631___   1886 AGCGAAAATCGAAAAAGAAACGGGTGTTTTACGGCTGTGACCGTTATCCG   1935
                     ||||.|||||||||||....||..|.|||||||||||||||||.|||||.
BL01281___top   1886 AGCGCAAATCGAAAAAACGCCGCATTTTTTACGGCTGTGACCGCTATCCT   1935

BSNT_02631___   1936 GACTGTGAATTCGTATCATGGGACAAACCAATTGAACGAAAATGCCCGAA   1985
                     ||.||||||||||||||||||||.|||||..|||||||.|||||.|||||
BL01281___top   1936 GAATGTGAATTCGTATCATGGGATAAACCGCTTGAACGGAAATGTCCGAA   1985

BSNT_02631___   1986 ATGCGGAAAAATGCTCGTCGAGAAAAAACTCAAAAAAGGCATACAAGTCC   2035
                     |||||...|.|||||.||.||||||||.||||||||||||.|.|||||.|
BL01281___top   1986 ATGCGAGGACATGCTTGTGGAGAAAAAGCTCAAAAAAGGCGTTCAAGTGC   2035

BSNT_02631___   2036 AATGCGTGGAATGCGATTATAAGGAAGAACCACAGAAGTAG   2076
                     |.|||||..|.|||||||||||||||||||.|||.||||||
BL01281___top   2036 AGTGCGTTAATTGCGATTATAAGGAAGAACAACAAAAGTAG   2076


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