Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02626 and BL01287
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:19
# Commandline: needle
# -asequence dna-align/BSNT_02626___ylqG.1.5803.seq
# -bsequence dna-align/BL01287___ylqG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02626___ylqG-BL01287___ylqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02626___ylqG-BL01287___ylqG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02626___ylqG
# 2: BL01287___ylqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1945
# Identity: 1092/1945 (56.1%)
# Similarity: 1092/1945 (56.1%)
# Gaps: 467/1945 (24.0%)
# Score: 2610.5
#
#
#=======================================
BSNT_02626___ 1 ---ATGAACATACGAAATGATGTGCAAAAGGCGCTGCAGC--------AC 39
||| ||.|..||.|||||.||.|| |||| ||
BL01287___ylq 1 TTGATG---ATGCTGAACGATGTACATAA-------CAGCTTAAGAAAAC 40
BSNT_02626___ 40 CTTTTCGGGCGTACAGCCG-------TCCCGCAGGAAACATCAAAAGTAA 82
..||| |.|||..|| |||.||.| ||||
BL01287___ylq 41 AATTT-----GAACAAGCGGATTCTCTCCAGCGG-----ATCA------- 73
BSNT_02626___ 83 ACGAAGCGCTAAACGGGG-------AGAAGCGTCTCCTCTTAGGAAAAGT 125
||..|||||.| ||||..|.||..|..|.||.|||||
BL01287___ylq 74 -------GCGGAACGGAGACGGATCAGAAAAGGCTGATGCTCGGCAAAGT 116
BSNT_02626___ 126 GCTTCG-TTTACTAG-GAGATCAGCATGCCCTGATCCAAGTCGGCAAT-C 172
|||.|| ||||..|| ||| |||...|||...||.|||.|||||||| |
BL01287___ylq 117 GCTCCGCTTTATCAGCGAG--CAGTTCGCCGAAATACAAATCGGCAATAC 164
BSNT_02626___ 173 AAACTGTTCAGGGAAAACTTGA---AACCC----AGCTTCGTCCTCAGG- 214
.||.|| .|||||.||.||||| |.||| ||| ||
BL01287___ylq 165 GAAATG-GCAGGGGAAGCTTGAGGCACCCCTGAAAGC----------GGG 203
BSNT_02626___ 215 ----CATACTATTGGTTTTCCTACGAAAAAAAAACGGCAG-AGCAAACAG 259
||| ||.||||||||.||.|||||.||..|||..| ||| .||||
BL01287___ylq 204 CGCTCAT--TACTGGTTTTCGTATGAAAAGAAGCCGGATGAAGC-GACAG 250
BSNT_02626___ 260 GCCGTCTTCAGGTCGTTCAAAGC-TTTGATCAAAATCCTAAAACCATTCA 308
||||.|||||||||||| .|||| |||||..||||.||.||.|||.|.||
BL01287___ylq 251 GCCGCCTTCAGGTCGTT-GAAGCGTTTGACAAAAACCCGAAGACCGTGCA 299
BSNT_02626___ 309 GGATGCAGCTGGCAAGCTTTTAAATGCCATGTCAGTGAAGACGTCAAACG 358
||||||.||....|||||.||.||.|...|.||..|||||..|.|.||.|
BL01287___ylq 300 GGATGCCGCCTTTAAGCTGTTGAACGGGCTTTCTCTGAAGCGGACGAAGG 349
BSNT_02626___ 359 CAGCTCTCATGATGACAGGAGCGATGCTGAA-GAGCAAAACACCCGTAAC 407
.|||..||.|..||...||||||.||||||| |||| |.||.||| |.|
BL01287___ylq 350 AAGCCGTCTTTCTGGTCGGAGCGTTGCTGAAGGAGC--AGCAGCCG-ATC 396
BSNT_02626___ 408 A--GAAAATGATATCAAAACAGCTGTCCGC-------TGGATGGACACGC 448
| |||||.|||.| ||.|| |||| |||.|.||.|..|
BL01287___ylq 397 AGGGAAAACGATTT---AAGAG----CCGCCATCAAGTGGCTTGAAAATC 439
BSNT_02626___ 449 TGCCTTCGCAAGACACAA-----AAAAAGCAGTTGAAACGGTTCTCTTCG 493
|||| .|||.| |.| ||||||..|..||..|.||..|.||||
BL01287___ylq 440 TGCC----GAAGTC-CGATGCCCAAAAAGGCGCCGATGCCGTCATGTTCG 484
BSNT_02626___ 494 CT-TTAAAGCGTGATCTTCCCATTCACTCCG-------AGATT---TTGA 532
|| ||||| ||.||.||||||.|.|||.||| .|||| ||
BL01287___ylq 485 CTCTTAAA-CGCGAACTTCCCGTCCACCCCGGCGTGCTCGATTCGATT-- 531
BSNT_02626___ 533 ATGGTGTTCACGCTGTGAAATCGCCTGTTCCGTTGCATCAGCACGTATCC 582
||| ||.||.|||...||.||||||.|..||.|||| |..|.|
BL01287___ylq 532 ATG--------GCCGTCAAAAGCCCCGTTCCGCTCAATGAGCA-GATTGC 572
BSNT_02626___ 583 CAG--CTGCT--ACAGGCAATCGACCAAAACC-CTCAGCAGAGCCAAATG 627
.|| | ||| |.|.| |||| |.||..|| |||||| .|.||..|.|
BL01287___ylq 573 GAGAAC-GCTTGATATG--ATCG-CGAACGCCGCTCAGC-CATCCCCAGG 617
BSNT_02626___ 628 -ATGTCAAAGCTAAAGGAAGCAG-----TTACGGTGC---TTTTAAATAG 668
|||..|||||| |||.||| || ||| |||||.| ||
BL01287___ylq 618 CATGGAAAAGCT----GAAACAGGCGCTTT----TGCCAGTTTTACA-AG 658
BSNT_02626___ 669 -TGAAATCGATGTCCATGCAGAACGGCTAATTGATAAGCTT--------- 708
.||.|..||.||.|||||.|||.||||.|||.|.||||||
BL01287___ylq 659 CGGAGACTGAGGTGCATGCCGAAAGGCTGATTCAAAAGCTTGCGGAACAC 708
BSNT_02626___ 709 -----ATTTCTTTAACCGACAATACGAAA---GCA---CCTTCTCCGGCG 747
||..|| |..||.|.||.| ||| |.|||| ||.
BL01287___ylq 709 ATCAGATCGCT------GGAAAAAGGAGAACTGCAGGCCGTTCT---GCC 749
BSNT_02626___ 748 AATACAGCTGGAAGCAGGGAGCTTAGCACA-CCAGCTGGCTCCCCCGGAA 796
|.||.||| .||||| || || .|||..|| |||||
BL01287___ylq 750 ATTAAAGC----CGCAGG----TT----CAGTCAGAAGG------CGGAA 781
BSNT_02626___ 797 AAGCCAGCCTGCCGATTGCAAATCACACAGCAGA-ACAGG-GAAGCAT-- 842
|| ||| ||| ||.|.|||||| .|.|| |..||||
BL01287___ylq 782 AA-----CCT-CCG---------CAAAAAGCAGACGCTGGCGGCGCATAC 816
BSNT_02626___ 843 --ACAAGAAGAGCTTGTTAAAACAGCAG--CAG-ACATTCC---AAT--- 881
|||.|||| .||.||||| ||| |||.||| |||
BL01287___ylq 817 GGACAGGAAG---------CAAAAGCAGCCCAGCACAATCCGCAAATCGC 857
BSNT_02626___ 882 ------TAAAGAAGCCCGCCAGCTGCTGGTGAAGCTGACGGAATCTGCTG 925
||||||.| ||.|.|..||..||.|||.|...||.|
BL01287___ylq 858 AGCAGCTAAAGACG---------TGTTCGCTAAATTGGCGGCACAAGCCG 898
BSNT_02626___ 926 AAAAAAACAGTCTCCAAATTGTGAAAGAAGCAGCAAATTGG----ATTAA 971
|||..|||.|....||.||||..|.||||||.||| || ||.||
BL01287___ylq 899 AAACGAACGGGACGCATATTGCAAGAGAAGCGGCA----GGCGTCATCAA 944
BSNT_02626___ 972 AGCGGCTGCTT-CATCGGGTGATAGTAAGTCACTTG---CAGCTTCAGCT 1017
||| |||| .||||.|.| .|| |.||.| .||||.|.||.
BL01287___ylq 945 AGC----GCTTGAATCGCGCG-----GAG-CTCTCGGACAAGCTCCGGCC 984
BSNT_02626___ 1018 GTTTTACAAG------CGGCACAAGTCACAGACCAGGAAGCCGAAGTCTT 1061
|||.|..||| ||.||.||| |||| |||| |||
BL01287___ylq 985 GTTCTGGAAGGATTCACGCCAAAAG----AGAC--GGAA--------CTT 1020
BSNT_02626___ 1062 TTTAAAGGCTGTTCAGC------------AGACAGCACC-CCATTTGGCG 1098
| |.|||| |.|||||.|| .|| |||.||
BL01287___ylq 1021 T----------TGCAGCATATCATGAAAGAAACAGCGCCTGCA-TTGACG 1059
BSNT_02626___ 1099 GATAAGGCAGATGT-TCTTTCTTTCTTATCCAAAG-TGAAAACGGCAATC 1146
.||||.||.||||| |..|.|.||||..|| ||| |.|||...|...|.
BL01287___ylq 1060 AATAAAGCCGATGTATTATCCGTTCTCCTC--AAGATCAAAGATGTTTTA 1107
BSNT_02626___ 1147 GGCGCAAGGGACGAGGTTGCGTTCATT----AAAGCGTTTGAACAAGG-- 1190
||||..||.||.|| ||..||||| |.||||.|.|||.|.||
BL01287___ylq 1108 GGCGTCAGAGATGA----GCTCTCATTGTTGAGAGCGATGGAAAACGGCG 1153
BSNT_02626___ 1191 ---------AAGCGCAGTCACATCTGGCGAAATGCAATCCATCAAGCTGG 1231
|||.|||| ||| .|||||||..|.|| |
BL01287___ylq 1154 CCGTTCTCAAAGAGCAG--------GGC---CTGCAATCTTTAAA----G 1188
BSNT_02626___ 1232 CTCTTTCTGCCTTAAGAGCATCGCATGAGGTA----GCCGA--------- 1268
|||.|.|||..|.|| ||||||.| .||||
BL01287___ylq 1189 CTCGTGCTGAATGAA---------ATGAGGCATGCTTCCGATCTTCCGGC 1229
BSNT_02626___ 1269 ACCAGTCAAACAAGAAGCCGATCAGCTTTTTCATAAATTAAATGGCCAGC 1318
.||.||.|||||.|||||.||.||..|.|||||....|||||.||.||||
BL01287___ylq 1230 TCCTGTAAAACAGGAAGCGGACCAAATCTTTCACCGTTTAAACGGACAGC 1279
BSNT_02626___ 1319 TTTTCATGCAGCAGGACCATCCATCATACAGCCAAATTGTAATGTCATTT 1368
|.||..|||||.|.||.||.||..|..|.|||||..||.|..||||.|..
BL01287___ylq 1280 TGTTTTTGCAGAATGATCAGCCTGCCCAGAGCCAGCTTTTTCTGTCGTAC 1329
BSNT_02626___ 1369 CCGATGTTTTCGAAGTCAGGGGTTCAGGACATGACTGTTCTGTTTAAAGG 1418
||..|||||||.|||...||.||.|||||..|||..|||.|.||.|||||
BL01287___ylq 1330 CCTCTGTTTTCAAAGAACGGCGTCCAGGATTTGAACGTTTTCTTAAAAGG 1379
BSNT_02626___ 1419 AAAGAAAGAAGCGGATGGAAAGCTTGATCCTTCCCATTGCCGCCTTTTGT 1468
..|||||.|||..||.|||||..|.||.||||||||.||||||||..|||
BL01287___ylq 1380 GCAGAAAAAAGACGACGGAAAAATCGACCCTTCCCAGTGCCGCCTCATGT 1429
BSNT_02626___ 1469 TTTTGCTGCAGCTTGATACACTAAAAGAAACCGTCGTTGATTGCTTGGTA 1518
|||..||.|||.|.||..|.||..||||.||.||..|.|||||.|||.|.
BL01287___ylq 1430 TTTACCTTCAGTTGGAAGCCCTTGAAGAGACGGTGATCGATTGTTTGATC 1479
BSNT_02626___ 1519 CAACAAAAAGTCATGACCATTACAATAGAGACTGATTTCGAGCTGCAGGC 1568
||.|||||.||||||||..|||||||.||.||..|.|||||..||.||.|
BL01287___ylq 1480 CAGCAAAACGTCATGACGGTTACAATTGAAACAAAGTTCGATTTGGAGTC 1529
BSNT_02626___ 1569 TGCGATCGATCCGATGGTGCCCGCGCTTAAACAGGGGCTAAAGGAAA--- 1615
|..|||.||.|||.|||| |||| |||| |||||||||
BL01287___ylq 1530 TTTGATTGAACCGCTGGT-CCCG-GCTT----------TAAAGGAAAACC 1567
BSNT_02626___ 1616 ---------TGGGGTACAGCCTTTCAGGGGTAAACGCT----AAAAAAAG 1652
||||.||||||.|.|||||.|| || |||||||.
BL01287___ylq 1568 TGAAAGAGCTGGGCTACAGCTTGTCAGGCGT-----CTCAGCAAAAAAAC 1612
BSNT_02626___ 1653 GGTTCACACCGAAGAAAAGGCTTCAA--TCGATCAATATAT--------- 1691
|| ||||| |.|.|| |||.||..|.|.|
BL01287___ylq 1613 GG-----------GAAAA--CATGAAGCTCGCTCCGTTTTTGGAGTCCCG 1649
BSNT_02626___ 1692 -----AACAAGTATCAGTGATCAGGAAGTGGATGTGAAAATATGA 1731
|||||.|..|||.||.| |.|||||||||||||||||||
BL01287___ylq 1650 TTTTGAACAAATTACAGAGAGC--GCAGTGGATGTGAAAATATGA 1692
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