Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02625 and BL01288

See Amino acid alignment / Visit BSNT_02625 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_02625___rnhB.1.5803.seq
#    -bsequence dna-align/BL01288___rnhB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02625___rnhB-BL01288___rnhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02625___rnhB-BL01288___rnhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02625___rnhB
# 2: BL01288___rnhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 802
# Identity:     537/802 (67.0%)
# Similarity:   537/802 (67.0%)
# Gaps:          68/802 ( 8.5%)
# Score: 1720.5
# 
#
#=======================================

BSNT_02625___      1 GTGAATACATTAACCGTAAAGGACATTAAAGACCGTTTGCAGGAAGTGAA     50
                     |||||.|||||||||||.||.||.||||||||.|.|.|.||....||||.
BL01288___rnh      1 GTGAAAACATTAACCGTCAAAGAAATTAAAGAACATCTTCAATCGGTGAG     50

BSNT_02625___     51 GGATGCACAAGACCCATTTATTGCCCAATGCGAAAACGACCCGAGAAAAA    100
                     .||||.|.|.|||||.|||||.|..||.|||.||||.||...|.||||||
BL01288___rnh     51 CGATGAAAAGGACCCTTTTATAGAGCAGTGCAAAAATGATGAGCGAAAAA    100

BSNT_02625___    101 GCGTTCAAACGCTTGTAGA-GCAATGGCTTAAAAAGCAAGCGAAAGAAAA    149
                     ||||||||.||||.||.|| || .|||||             .|||||||
BL01288___rnh    101 GCGTTCAAGCGCTCGTCGACGC-CTGGCT-------------GAAGAAAA    136

BSNT_02625___    150 AGCGCTGAAA-----------------GAACAATGGGTGAATATGACTTC    182
                     |    |||||                 |||.|.|||..|...|||||.||
BL01288___rnh    137 A----TGAAAGGCTTTCGGCCATGCGGGAAGAGTGGCAGGCGATGACGTC    182

BSNT_02625___    183 CTATGAAAG---GCTGGCAAGAAACAAGGGATTTCGCTTGATTGCAGGTG    229
                     .|.||||.|   ||||   |||.....|||.|.||..|..||.||.||..
BL01288___rnh    183 TTTTGAACGGTCGCTG---AGAGCGCGGGGCTATCAATATATCGCCGGAA    229

BSNT_02625___    230 TTGACGAGGTCGGCCGGGGGCCATTGGCAGGACCAGTTGTCGCCAGCGCA    279
                     |.|||||||..|||.|.|||||..|.|||||.||.|||||||||..|||.
BL01288___rnh    230 TCGACGAGGCGGGCAGAGGGCCTCTCGCAGGGCCGGTTGTCGCCGCCGCT    279

BSNT_02625___    280 GTCATCCTTCCAGAGGAATGTGAAATACTTGGGCTGACAGACTCCAAAAA    329
                     ||||||||...|||.||.|||||||||.|.|||||||||||.||.|||||
BL01288___rnh    280 GTCATCCTCAAAGAAGATTGTGAAATATTAGGGCTGACAGATTCGAAAAA    329

BSNT_02625___    330 GCTTTCAGAGAAAAAACGCGAGGAATATTACGAGCTT-----ATTATGAA    374
                     .||.|||.||.|||||.|.||.||.|||||     ||     ||.|||.|
BL01288___rnh    330 ACTGTCAAAGCAAAAAAGAGAAGACTATTA-----TTCATACATAATGGA    374

BSNT_02625___    375 GGAAGCACTGGCGGTCGGGATAGGAATTGTAGAAGCTACTGTGATTGATG    424
                     .|||||....||.|||||..|.||.||.|..||.||...||.|||.||||
BL01288___rnh    375 AGAAGCCGCAGCAGTCGGCGTCGGGATCGCGGACGCCCATGAGATCGATG    424

BSNT_02625___    425 AGATCAATATATATGAAGCTTCAAAAATGGCAATGGTGAAAGCGATACAA    474
                     ||.|.|||||.||||||||.||.|||..|||.|||.||||||||.|.|||
BL01288___rnh    425 AGCTGAATATTTATGAAGCCTCCAAAGCGGCGATGCTGAAAGCGGTCCAA    474

BSNT_02625___    475 GATTT----GTCGGGTACACCTGATTATTTGCTTGTTGACGCAATGACAC    520
                     |...|    ||||    ||||.||||||.|.||..|.|||||.|||.|.|
BL01288___rnh    475 GCGCTGGACGTCG----CACCGGATTATCTTCTGATCGACGCCATGTCGC    520

BSNT_02625___    521 TTCCCCTCGACACGGCTCAGGCGTCAATTATAAAAGGCGATGCCAAAAGC    570
                     ||.|..||||.||.|..|||.|.||.|||||.|||||.||||||||||||
BL01288___rnh    521 TTGCGGTCGATACAGAGCAGTCATCGATTATTAAAGGGGATGCCAAAAGC    570

BSNT_02625___    571 GTGTCTATTGCGGCAGGTGCGTGTATCGCAAAAGTGACGAGGGACCGAAT    620
                     |..||.||.||.|||||.||.||.||||||||.||||||||||||.|..|
BL01288___rnh    571 GCCTCGATAGCAGCAGGCGCATGCATCGCAAAGGTGACGAGGGACAGGCT    620

BSNT_02625___    621 GATGAGCGCTTATGCCGAAACGTATCCCATGTACGGCTTTGAAAAAAATA    670
                     ||||...|..||.||.||||.||||||..|.|||||.||||||||..|||
BL01288___rnh    621 GATGGATGAATACGCTGAAAAGTATCCTCTCTACGGGTTTGAAAAGCATA    670

BSNT_02625___    671 AAGGCTATGGGACAAAAGAACATTTGGAAGCTCTCGCTGCATACGGCCC-    719
                     |||||||.||.||.||.||.|||.||.|.||.||.||...||||||||| 
BL01288___rnh    671 AAGGCTACGGAACGAAGGAGCATCTGAATGCCCTGGCGAAATACGGCCCG    720

BSNT_02625___    720 -AACTGAATTGCACCGCAAAACTTTCGCTCCTGTTCAATCTTTCA--GAT    766
                      ..|.||  |.|||||.|.|.|.|||||.||||||.||.|  .||  .||
BL01288___rnh    721 TCGCCGA--TACACCGAAGATCGTTCGCCCCTGTTAAAGC--ACATGAAT    766

BSNT_02625___    767 AA    768
                     ||
BL01288___rnh    767 AA    768


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