Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01064 and BL01297

See Amino acid alignment / Visit BSNT_01064 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:34
# Commandline: needle
#    -asequence dna-align/BSNT_01064___ydjH.1.5803.seq
#    -bsequence dna-align/BL01297___ydjH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01064___ydjH-BL01297___ydjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01064___ydjH-BL01297___ydjH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01064___ydjH
# 2: BL01297___ydjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 845
# Identity:     507/845 (60.0%)
# Similarity:   507/845 (60.0%)
# Gaps:         157/845 (18.6%)
# Score: 1333.5
# 
#
#=======================================

BSNT_01064___      1 ATGCGGGGATTTTTAGGGA-AAGC-----GATCTT-----TG-TTGTGCT     38
                     ||   |.||..||||..|| ||||     ||||||     || ||.|.||
BL01297___ydj      1 AT---GAGAAGTTTATTGAGAAGCGCGATGATCTTATGTATGATTTTCCT     47

BSNT_01064___     39 GGCTGTCTTCAT---TATGGTGCCTTTACTGGGGATCGAAGCGGCAAGAG     85
                        |||||||||   |||  .||||          .||..|||||   ||
BL01297___ydj     48 ---TGTCTTCATCCCTAT--AGCCT----------CCGGTGCGGC---AG     79

BSNT_01064___     86 CCTCTGAATCGCAGCAGCATGTGTACGAT-----CGCGCTCATCTATTGT    130
                     ||||||||..|.|||.|..|||.||.|||     ||.|||  ||   ||.
BL01297___ydj     80 CCTCTGAACAGAAGCGGTTTGTTTATGATGAAGCCGGGCT--TC---TGA    124

BSNT_01064___    131 CAAAAGCGGAGATCGGAAAACTTGAATCTCTCTCGGCAG---AGTTGGGT    177
                     |.|||..|||.||||..||.||.|||.|.||   |||||   |.|||||.
BL01297___ydj    125 CCAAACAGGAAATCGAGAAGCTGGAAACGCT---GGCAGCCAAATTGGGC    171

BSNT_01064___    178 GC--AAAGAGAGACACTAATTTCATCATTATTACGACCAAAAGCACAAAC    225
                     ||  ||.|.||||| |.|.||| ||||||.|.||||||||....||||||
BL01297___ydj    172 GCCGAACGGGAGAC-CGACTTT-ATCATTGTGACGACCAATGATACAAAC    219

BSNT_01064___    226 G--------GTGAAGATAT-TGCCGACTATACCGGCGATTTTTATGATCG    266
                     |        ||.||||.|| |||.||         .||.||.||||    
BL01297___ydj    220 GGCCGCGATGTAAAGAAATATGCGGA---------GGACTTCTATG----    256

BSNT_01064___    267 TTACGGAAAA------------------------GGCAGTACAGCCATTT    292
                       |||.||||                        ||.|.|.|||||.|.|
BL01297___ydj    257 --ACGAAAAAGCGCCCGGCTACCAGAAGAAGCACGGAAATGCAGCCGTAT    304

BSNT_01064___    293 TGACCATTGATATGACAAACAGAGAAGTGTTTATCGCAGGCTTCAAAAAA    342
                     |.||..|.||||||....|.||||||||.|.|.|.||.|||||.|||||.
BL01297___ydj    305 TAACGGTAGATATGGAGCATAGAGAAGTCTATCTTGCCGGCTTTAAAAAG    354

BSNT_01064___    343 GCCGAACAGTATTTGGACAACAGCAGGCT---CAA---TAGCATCAGAAA    386
                     ||.|||.|.||||||.|..||..||||||   |||   |||    |||||
BL01297___ydj    355 GCTGAAGAATATTTGAATGACGCCAGGCTGGACAAAATTAG----AGAAA    400

BSNT_01064___    387 TACGATTTCATCTGATTTATCCAATGAAAATTATTTTGA---AGCTTTTG    433
                     .|  ||..|..|.|||.|||||   ||.||..|||.|||   .||.||.|
BL01297___ydj    401 AA--ATCACGCCGGATATATCC---GACAAGCATTATGAGGCCGCATTCG    445

BSNT_01064___    434 AGACATATATTCAGCTTTCCTATAAAGATATGGGCATAAAACCGGGAGTA    483
                     |.|..|.|||..||....|..||.|.|||||||..|..||||||.|.|  
BL01297___ydj    446 AAATGTTTATGAAGGCGGCGCATGATGATATGGAGAAGAAACCGTGGG--    493

BSNT_01064___    484 AACCCTGACAACATATTCTTTACATGGTGGTTTCAGCTGATTGCTGCCAT    533
                         |.||||.|||.||.||||....|||||||||    ||||||....|
BL01297___ydj    494 ----CGGACAGCATCTTTTTTAAGACGTGGTTTCA----ATTGCTTGTTT    535

BSNT_01064___    534 C-GCAG---TCGGGGGAATTGCGGTTTCAATCATGCTTTATCATGCAGGC    579
                     | ||||   |||.|||||||||.||..|.||.|||...||..||.|||||
BL01297___ydj    536 CGGCAGTCATCGCGGGAATTGCCGTCGCCATTATGAAATACAATTCAGGC    585

BSNT_01064___    580 GGCAAAGTAACGGTTAATGGAAATACATATATGGATCAGCG-TACGTCTG    628
                     ||||||||.||.||.|.||.||..||.||||| ||.|.|.| ||||||.|
BL01297___ydj    586 GGCAAAGTGACAGTAAGTGCAAGCACTTATAT-GAACGGTGATACGTCCG    634

BSNT_01064___    629 ATGTGATTGATC---AAT-ACGACACTTATATTAGAACGACTGTAACAAG    674
                         ||.|||||   ||| |.|||...||.||.||||||||.||.||||.
BL01297___ydj    635 ----GAGTGATCAGAAATAATGACGAATACATCAGAACGACCGTCACAAA    680

BSNT_01064___    675 AGAAAGAAAACCATCAGATAAAGACAGCGGCAGCGATGGCGGTGTTACGA    724
                     |.|.||||||||.||..||||..|.||| .||     |||||.|..||||
BL01297___ydj    681 ACAGAGAAAACCGTCCAATAATAAAAGC-TCA-----GGCGGCGGAACGA    724

BSNT_01064___    725 AAGGCGGCACGTCAT----ACAGTGGAAGCCGGGGCAGTTTTTAA    765
                     ...|||| |.|.|||    ||||.||.||||||||.||.|||||.
BL01297___ydj    725 CGAGCGG-AGGCCATTCGCACAGCGGCAGCCGGGGAAGCTTTTAG    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01064 and BL01297

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
