Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01059 and BL01299
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_01059.1.5803.seq
# -bsequence dna-align/BL01299___pspA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01059-BL01299___pspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01059-BL01299___pspA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01059
# 2: BL01299___pspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 692
# Identity: 228/692 (32.9%)
# Similarity: 228/692 (32.9%)
# Gaps: 394/692 (56.9%)
# Score: 702.5
#
#
#=======================================
BSNT_01059 1 ATGAGTATAATTGGAAGATTTAAAGATATTAT-GTCTGCGAATATCAATG 49
|||||||||.|..|.||.||.|||||.||||| |.|.|| |||||.||.|
BL01299___psp 1 ATGAGTATATTAAGCAGGTTCAAAGACATTATGGCCAGC-AATATTAACG 49
BSNT_01059 50 CTTTATTGGACAAGGCTGAAAATCCGGAGAAAATGGCAGATCAATATTTA 99
||||..||||.||.||.||.||..||||.|||||||..|||||.|||.|.
BL01299___psp 50 CTTTGCTGGATAAAGCGGAGAACACGGAAAAAATGGTGGATCAGTATGTC 99
BSNT_01059 100 AGAAATATGAATAGCGATTTGGCTAAGGTTAAGGCAGAAACAGCAGCTGT 149
||.||..|.||.|||||.||....||.||.|||||.|||||.||..|.||
BL01299___psp 100 AGGAACTTAAACAGCGACTTAAACAAAGTAAAGGCGGAAACGGCGTCCGT 149
BSNT_01059 150 TATGGCCGAGGAGCAGAGAGCAAAAAGAGAATATCAC-----GAATGCCA 194
.|||||.|..|||||.||.||||||||||| || ||.||||.
BL01299___psp 150 CATGGCGGCCGAGCAAAGGGCAAAAAGAGA-----ACTGGCGGATTGCCG 194
BSNT_01059 195 GGCGGATATGGAAAAGATGGAAAGCTATGCAATGAAGGCGCTGCAAGCCG 244
||||||.||.||.|||.|.||..||||||||||||||||..||.||||||
BL01299___psp 195 GGCGGAAATCGACAAGCTTGAGCGCTATGCAATGAAGGCTTTGGAAGCCG 244
BSNT_01059 245 GGAATGAGAGC-GATGCGAGAAAATTT------------------CTTGA 275
|.|..||| || |||||..|||.|||| |||||
BL01299___psp 245 GCAGCGAG-GCGGATGCCCGAACATTTTTAGAAAAGAAAGCGGTGCTTGA 293
BSNT_01059 276 AA-GAA--------------AAACACCTTTGGAGTCAAA--GCTT----- 303
|| ||| ||||..|.|| ||||| ||.|
BL01299___psp 294 AACGAAGGCATCCGAGTTAGAAACTGCGTT----TCAAACGGCGTCATCC 339
BSNT_01059 304 --------TC--ATGA---------------------------------- 309
|| ||||
BL01299___psp 340 AATGCGAATCAAATGAAAAAAATGCACGATAAGCTCGTTTCCGATATCGG 389
BSNT_01059 309 -------------------------------------------------- 309
BL01299___psp 390 GGAGCTTGAAGCACGCCGCGCCGCGATCAAAGCGAAATGGACAGCGGCGA 439
BSNT_01059 309 -------------------------------------------------- 309
BL01299___psp 440 AAACACAGGAAAGAATGAATAAACTCGGTGCATCTGCAGCGAATGCCAAC 489
BSNT_01059 309 -------------------------------------------------- 309
BL01299___psp 490 CATTCAATGTCCGCTTTCGGCAGAATGGAAGAAAAGGCAAACCGGGCGCT 539
BSNT_01059 309 -------------------------------------------------- 309
BL01299___psp 540 TGATGAAGCGAATGCGATGGCTGAATTGAACGCCGCTCCTCAAGATGACA 589
BSNT_01059 309 -------------------------------------------------- 309
BL01299___psp 590 TAGAAGACCTGAAGGCTAAATATGACAGCCCTTCTAATGTGGATGATGCG 639
BSNT_01059 309 ------------------------------------------ 309
BL01299___psp 640 CTTGCCGCATTGAAAGCGAAAATGGCGGGTCAAAAGTCATAG 681
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