Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01832 and BL01316

See Amino acid alignment / Visit BSNT_01832 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_01832___yisJ.1.5803.seq
#    -bsequence dna-align/BL01316___cotH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01832___yisJ-BL01316___cotH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01832___yisJ-BL01316___cotH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01832___yisJ
# 2: BL01316___cotH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1235
# Identity:     575/1235 (46.6%)
# Similarity:   575/1235 (46.6%)
# Gaps:         472/1235 (38.2%)
# Score: 1226.0
# 
#
#=======================================

BSNT_01832___      1 ATG-GAGC---------GCGTGCATTTATTTT-----TTCATCGGGAGCA     35
                     ||| |.||         ||..||.||||...|     ||||||.|.||||
BL01316___cot      1 ATGAGTGCCACTGCCTTGCCGGCCTTTAGGCTGCACATTCATCCGAAGCA     50

BSNT_01832___     36 GCTG-----------AAAAG------------------------------     44
                     .|||           |||||                              
BL01316___cot     51 TCTGCTTGAGTTGAAAAAAGACGTCTGGAGTGATGAAGCCGTTCCCGGCA    100

BSNT_01832___     45 -------GAAAGGTACAGCCAAGGGGCTTTTCGTAACAGATCGATCTGTT     87
                            ||..|||.||||.|||..||.|.|||   |||           
BL01316___cot    101 TGCTCTTGACCGGTTCAGCAAAGACGCCTGTCG---CAG-----------    136

BSNT_01832___     88 TCTCCCATTCTTCTCACACAGCGTG--------------ACAGAGCGGAA    123
                                |.|||.||||.|.|              ||.|| ||.||
BL01316___cot    137 -----------TGTCATACAGAGGGGCCCACACCCGCAAACTGA-CGAAA    174

BSNT_01832___    124 AAGGCATCCTAT---------------GA-AATCAGCTGGGAAAAGTCTC    157
                     ||   |||||||               || |||.|    .||||||    
BL01316___cot    175 AA---ATCCTATTTCATTCAATATCCGGACAATAA----AGAAAAG----    213

BSNT_01832___    158 TGCTTGGTGAAAGGACACTTTTTTTGAATGCAGAACAGGATGATCCGTCC    207
                      |||..||          ||..||||||.||.|||.|..||||||||||.
BL01316___cot    214 -GCTGCGT----------TTCATTTGAACGCGGAATATCATGATCCGTCT    252

BSNT_01832___    208 CTGATGCGGCGCAGACTCGCCTATTGTTTTTTTGACCAGATCGGCGTACC    257
                     .|.||..|...|||.||..|||.|..|||||||||.||.||||||||.|.
BL01316___cot    253 TTCATCAGAAACAGGCTTTCCTTTCATTTTTTTGAACAAATCGGCGTCCT    302

BSNT_01832___    258 TGCTCCCGCTGCCTCGTACA------GCTTTCTGACCATCAATGGCCAGC    301
                     |||.||.||.||.||  |||      .||||.|    |||||||...|..
BL01316___cot    303 TGCGCCAGCAGCATC--ACACGTTTTCCTTTAT----ATCAATGAAAAAA    346

BSNT_01832___    302 CTGAAGGCATTTATTTGAACATCAAGA--------ACCATCAGCCAGCCG    343
                     ..||||||||.|||||.||.|||  ||        ||.||||        
BL01316___cot    347 AAGAAGGCATCTATTTAAAAATC--GAATCTGTTGACGATCA--------    386

BSNT_01832___    344 GT------AAAAGGAG----TTACGGAGTGAAGACGGCCGATCCAAGGGT    383
                      |      ||.|||||    |||  ||   |||..||.|.||       |
BL01316___cot    387 -TTTCTTAAAGAGGAGAAATTTA--GA---AAGGGGGGCCAT-------T    423

BSNT_01832___    384 TCCATTGT-CCCTTTTTAACAATG-----ATTTCTCGGC-----------    416
                     |  |||.| ||.||..|.||.|||     .||||||.||           
BL01316___cot    424 T--ATTATGCCGTTGATGACGATGCTAATTTTTCTCTGCTGAGTTCCTTC    471

BSNT_01832___    417 ------------------ATTCT---------------------------    421
                                       |.|||                           
BL01316___cot    472 AATAAAAAGGCTAAGCAAAATCTCATGCAGGGATACGAAAGAAAAACGGG    521

BSNT_01832___    422 -----------------------TACATGAATTTTTCATAC-TGATCCGC    447
                                            |.|||||.|||.|| ||| |.|||...
BL01316___cot    522 TTCAAGCCGCCACGATGACTACCTCCATGAGTTTATC-TACTTTATCAAT    570

BSNT_01832___    448 ACAGCCGGAGATGACGAATTGGCTGAAA---GGATTAAATTGTATCTGGA    494
                     ||.|||..|||.|||..|||   |||||   ..||.|||...|||||.||
BL01316___cot    571 ACCGCCAAAGACGACATATT---TGAAAAAGAAATCAAACGCTATCTCGA    617

BSNT_01832___    495 TGTCAAGCTGTTTTTTTTGTGGCTGATCGGCAACGCCTGCACC---AAT-    540
                     ||||||.|..|.|||..|||||||.||||||..||.|||||||   ||| 
BL01316___cot    618 TGTCAAACAATATTTGCTGTGGCTCATCGGCGCCGTCTGCACCCAAAATT    667

BSNT_01832___    541 --CAAGGCTT------TTACTACACATTTTGTTTAAACGAATCCGGTCGG    582
                       .|.|||||      |.|.|||.|..|||.||||||      |||||| 
BL01316___cot    668 TCGACGGCTTTGTCCATAATTACGCGCTTTATTTAAA------CGGTCG-    710

BSNT_01832___    583 CTTT-------ACGTTTC----------------------CCCG--ATGG    601
                                |||||||                      |.||  ||||
BL01316___cot    711 ----CACAAAAACGTTTCAAATCATTCCATGGGATTATGACGCGACATGG    756

BSNT_01832___    602 AGAC--AAGATCGCTTGCCGTACAAGAATGGTATGAAG-AAGACCCGCTT    648
                     .|||  ||.|    ||..||...|||||    |||.|| |..|||.|.||
BL01316___cot    757 GGACGGAATA----TTCACGGGGAAGAA----ATGGAGCACAACCGGATT    798

BSNT_01832___    649 CTGACAAAAGG---AAAGACGCTTTCGTCAAGGCTTCTATCCATTCCCGC    695
                     |.|.|.|||||   .||.|||||.||..|||||||.||...|| |||||.
BL01316___cot    799 CCGGCGAAAGGCTATAATACGCTGTCTGCAAGGCTGCTCGACA-TCCCGG    847

BSNT_01832___    696 C--TTCAGGTCGCAATATCACACCTTAATGAAAAACGTGCTGAAGCGGTC    743
                     |  |||| .||.|||||....|..|||||||||||.||..||.|.||...
BL01316___cot    848 CTTTTCA-ATCCCAATACTTTAATTTAATGAAAAATGTCTTGCACCGCCA    896

BSNT_01832___    744 GTTTACTAT------------------TGAACGATTATCT--CCTCTCAT    773
                     .|||||.||                  ||  ||.|.|.||  |       
BL01316___cot    897 ATTTACAATCAGCCGGCTTTCGCGGTATG--CGGTAAACTGGC-------    937

BSNT_01832___    774 CAACG----AATGGCACCTTGACATTTGTCAAAGTGCTGCTGATGATCCT    819
                       |||    |||.||.|||     |||.|        ||...||||||||
BL01316___cot    938 --ACGAGACAATCGCGCCT-----TTTCT--------TGAACATGATCCT    972

BSNT_01832___    820 TTTA------TCAAAAAAAGCC--CCTTTCAAATCGAAAAGGAGCAGACC    861
                     |.||      |||.|.|.||||  |        |||||.|.|||||.|  
BL01316___cot    973 TATACAACCGTCACATACAGCCGGC--------TCGAAGATGAGCAAA--   1012

BSNT_01832___    862 AACATACTTAGAGAAATT--------------GAGGAA-CGG---CAGGA    893
                     ||||.|.||       ||              |||||| |||   |.|  
BL01316___cot   1013 AACAAATTT-------TTCATTTCATCGATCAGAGGAAGCGGTTCCTG--   1053

BSNT_01832___    894 CTTTTTGCAAGCACACTTAGC----AAGACTTTAG    924
                     |||||  |.||    |||..|    ||        
BL01316___cot   1054 CTTTT--CGAG----CTTTCCCGATAA--------   1074


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