Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01844 and BL01341

See Amino acid alignment / Visit BSNT_01844 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01844___yisR.1.5803.seq
#    -bsequence dna-align/BL01341___yisR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01844___yisR-BL01341___yisR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01844___yisR-BL01341___yisR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01844___yisR
# 2: BL01341___yisR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     577/929 (62.1%)
# Similarity:   577/929 (62.1%)
# Gaps:         130/929 (14.0%)
# Score: 1637.5
# 
#
#=======================================

BSNT_01844___      1 ATGCCTCGCATCCTGTTTACAGTCCCGCCTTTTCCGGTATTTATCGCAGC     50
                     |||...|..|||.|.||||||.|.|||||..|.||.||.||.||..|.|.
BL01341___yis      1 ATGGAACATATCATCTTTACAATTCCGCCGCTCCCTGTGTTGATTACCGG     50

BSNT_01844___     51 TGGGGAAGGGGTTTTTAAAAAAGGAGAAACCCATGTGAAACGTGTATTCT    100
                     .||.||||||.|.||.||||.|||.||||..|||||||..||||.||..|
BL01341___yis     51 CGGAGAAGGGCTGTTCAAAAGAGGGGAAAAGCATGTGAGGCGTGAATATT    100

BSNT_01844___    101 CCGTGTTTGATCTGATATATGTCAAACA--GGGAACGTTATATATAACGG    148
                     |||||||||||||..|||||||.|.|||  ||||||  |||.|.|.||  
BL01341___yis    101 CCGTGTTTGATCTCTTATATGTGATACAGGGGGAAC--TATTTTTGAC--    146

BSNT_01844___    149 AAAATGAAACATCGTTTTCTGTTGAAGGCGGCGAG---------------    183
                                           |||.|.|||||||               
BL01341___yis    147 ----------------------TGAGGACGGCGAGCCCCATCAGATCCGG    174

BSNT_01844___    184 ---------TACATCTTGCTTTCTCCCGGTCTTGAACACTACGGGACGA-    223
                              ||||||.|.|||..|||.||.||.||.||.||.||  |.| 
BL01341___yis    175 GAAGGGGAATACATCATCCTTATTCCGGGGCTCGAGCATTATGG--CCAC    222

BSNT_01844___    224 -AGGGCAGTGATGAAGCAACCTCCTACTATTGGCTTCACTTCGATGAACA    272
                      ..|||.||.|.||.|..|||..|||.|.||||||.|||||..|.||.| 
BL01341___yis    223 CGCGGCTGTCAAGACGATACCCGCTATTTTTGGCTGCACTTTCAGGAGC-    271

BSNT_01844___    273 TCG--ATATGAATTTACG--GCAAAGGGAGG-CAGCAACTGGTCTGAGCT    317
                      ||  .||||..||..||  ||  ||||||| .|| ||||||.||||.||
BL01341___yis    272 -CGTCCTATGGCTTCGCGCAGC--AGGGAGGTGAG-AACTGGACTGAACT    317

BSNT_01844___    318 TCAGC--AGGAAAAAGGGAGCTTCGAAGAGCCGGC-------CCGCTACG    358
                     ..|||  |||  ||.||||..||.|||..||||.|       |...||..
BL01341___yis    318 CAAGCTGAGG--AAGGGGACATTTGAAACGCCGACATTGTATCATTTAAA    365

BSNT_01844___    359 GATTGGCCTTGCCGAGAAAAGGCAAGGTGCAGCGCCC-----GCAGTTTA    403
                     ||||       ||||||||.||.|||    |.||.||     || |||||
BL01341___yis    366 GATT-------CCGAGAAAGGGAAAG----ATCGACCAAAAAGC-GTTTA    403

BSNT_01844___    404 TGGCGCAGCAGTTTGAAAAGC---TGATCGATTACTCTGCGGAAAACTCT    450
                     |.|..|||||||||   |.||   ||||.||..|.||.||..||||.||.
BL01341___yis    404 TCGAACAGCAGTTT---AGGCGTTTGATTGACGATTCCGCCCAAAATTCC    450

BSNT_01844___    451 GATTTGCCGCTCAGAAAGCAAATTTTATTTGCGGAGCTGATGCTGCATCT    500
                     ||..|||||||..|.|.|||..|.||.||.|..||||||.||.|.|| ||
BL01341___yis    451 GACCTGCCGCTTCGCAGGCAGCTCTTGTTCGAAGAGCTGCTGATTCA-CT    499

BSNT_01844___    501 T-CAAAAAGAAGCGTTCCAAATACCGTCTGCGAAAGAGCGGGTAGCCTGG    549
                     | ||.||.||.||||||||.||.||.||.||||..|||||.|||||.|..
BL01341___yis    500 TGCAGAAGGAGGCGTTCCATATTCCTTCGGCGAGTGAGCGTGTAGCATCC    549

BSNT_01844___    550 GAGGCGGCCCGGTAC----TTACA-GGA---GCACTATAAGGAAAAGACG    591
                     ||.||        ||    ||||| .||   .||.||||||||.|||...
BL01341___yis    550 GAAGC--------ACAGCATTACATCGACCGCCATTATAAGGAGAAGCTC    591

BSNT_01844___    592 ACAATCAAGGATCTGTC-GCTCGCCCTTCACTACCATCAGGATTATGTGA    640
                     |..||..||.|.||.|| ||| ||||||||.||.||.|||||.||..|.|
BL01341___yis    592 AGCATGGAGCAGCTCTCGGCT-GCCCTTCATTATCACCAGGACTACATTA    640

BSNT_01844___    641 GCCGCTGTATGCAGCAGGTGCTCGGCGTAACTCCGGCACAATACACGAAC    690
                     .||||||.|||||..|||||.|.|||.|.||.||||..|||||..|.||.
BL01341___yis    641 CCCGCTGCATGCAAAAGGTGTTTGGCATCACACCGGGCCAATATGCCAAT    690

BSNT_01844___    691 CGGGTGAGAATGACGGAAGCGAAGCGTCTTTTATCCTCTACAAATGATAA    740
                     ..||.||.|.|....|||||||||||.||..|.||.||||||||.||.||
BL01341___yis    691 AAGGCGAAAGTTTTTGAAGCGAAGCGGCTCCTCTCTTCTACAAACGACAA    740

BSNT_01844___    741 AATGGGCGTT-----ATTGCGGAAACGGTCGGAATGGAAGATCCGACATA    785
                     ||||     |     |||||.|||...||||||||.||.||||||||.||
BL01341___yis    741 AATG-----TCATCGATTGCCGAACAAGTCGGAATCGATGATCCGACCTA    785

BSNT_01844___    786 CTTTTCAAAACTCTTTAAGCAGATAGAAGGCATTTCACCAATTGAATACC    835
                     .||.|||||.||.|||||.||.||||||||.|||||.||..||||||||.
BL01341___yis    786 TTTCTCAAAGCTGTTTAAACAAATAGAAGGGATTTCGCCCGTTGAATACA    835

BSNT_01844___    836 GGAAAATTGTCAGCCGGAAAGTTCAATAA    864
                     |.||.||..|.|..||.||..||.|.|.|
BL01341___yis    836 GAAAGATGATGAAGCGAAATATTGAGTGA    864


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