Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01839 and BL01342

See Amino acid alignment / Visit BSNT_01839 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01839___asnO.1.5803.seq
#    -bsequence dna-align/BL01342___asnO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01839___asnO-BL01342___asnO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01839___asnO-BL01342___asnO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01839___asnO
# 2: BL01342___asnO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1881
# Identity:    1410/1881 (75.0%)
# Similarity:  1410/1881 (75.0%)
# Gaps:          75/1881 ( 4.0%)
# Score: 5067.5
# 
#
#=======================================

BSNT_01839___      1 ATGTGTGGAATTACGGGTTGGGTCGATTTTAAAAAGCAGCTCGTCC-AGG     49
                     |||||||||||.|||||.||||||||||||||.||||.|||.|||| ||.
BL01342___asn      1 ATGTGTGGAATAACGGGGTGGGTCGATTTTAAGAAGCCGCTTGTCCGAGA     50

BSNT_01839___     50 AAAAACAAACGATGGACAGAATGACAGACACTCTTTCCAAACGAGGGCCT     99
                     ..|..|||.| |||||.|..|||||.||.||.|||||.|||.||||.|||
BL01342___asn     51 GCAGTCAATC-ATGGAGAAGATGACTGATACGCTTTCGAAAAGAGGACCT     99

BSNT_01839___    100 GATGATTCAAACGTTTGGGGGGAGCACCATGTTTTATTCGGACATAAAAG    149
                     ||||||.|.||..|||||||..|||.||||||||||||||||||||||.|
BL01342___asn    100 GATGATACGAATATTTGGGGAAAGCGCCATGTTTTATTCGGACATAAACG    149

BSNT_01839___    150 ACTT-GCAGTTGTTGATATTGAAGGAGGACGCCAGCCGATGGCGTGTACC    198
                      ||| ||||||||.|||.|.|||||.||..|.|||||||||.|..|.||.
BL01342___asn    150 -CTTGGCAGTTGTGGATCTGGAAGGCGGCAGACAGCCGATGACCCGCACA    198

BSNT_01839___    199 TATAAAGGGGATACG--TACACCATTATTTACAATGGCGAGCTGTATAAC    246
                     .||.||  |||||.|  ||.||.|||...||.|||||||||||.|||||.
BL01342___asn    199 CATCAA--GGATATGATTATACGATTTGCTATAATGGCGAGCTCTATAAT    246

BSNT_01839___    247 ACGGAAGATTTGCGCAAAGAATTGCGGGCGCGGGGCCATCAATTC--GAG    294
                     |||||.||||||||.|||||..|..||..||||||.|||||||||  |||
BL01342___asn    247 ACGGAGGATTTGCGAAAAGAGCTTAGGCGGCGGGGGCATCAATTCAAGAG    296

BSNT_01839___    295 CGTACGTCAGATACCGAGG---TGCTTC-TGCACAGCTACATCGAGTGGC    340
                     | .|| ||||||||.||||   |||||| |.||    |||||.||.|||.
BL01342___asn    297 C-CAC-TCAGATACAGAGGTTTTGCTTCATTCA----TACATGGAATGGA    340

BSNT_01839___    341 AGGAAGACTGTGTCGACCATCTCAATGGCATATTCGCTTTCGCTGTGTGG    390
                     |.||.||.||..|||||...||.||.||.||.||.||.||.||.||.|||
BL01342___asn    341 AAGAGGAATGCATCGACAGGCTGAACGGAATTTTTGCATTTGCGGTATGG    390

BSNT_01839___    391 GATGAAAAGCGTAATCTGCTGTTTGCCGCGAGAGACCGTCTCGGTGTAAA    440
                     |||||||||||..||||.||.|||||.||..|.|||||.||.|||||.||
BL01342___asn    391 GATGAAAAGCGGGATCTTCTTTTTGCGGCACGCGACCGGCTTGGTGTTAA    440

BSNT_01839___    441 GCCGTTTTTTTACA-CGAAGGAAGGCTCTTCATTTCTCTTCGGGTCGGAA    489
                     .|||||.||||||| |||| .|.|||||.||||||.|.|||||.||.|||
BL01342___asn    441 ACCGTTCTTTTACACCGAA-CAGGGCTCATCATTTTTGTTCGGATCTGAA    489

BSNT_01839___    490 ATCAAAGCAATCCTCGCGCACCCTGATATAAAAGCGCGAGTGGACAGAAC    539
                     ||||||||.||||||||.||.|||||..|.|||||....||.|||.|..|
BL01342___asn    490 ATCAAAGCCATCCTCGCTCATCCTGAAGTGAAAGCAAAGGTAGACCGTTC    539

BSNT_01839___    540 GGGACTTTCTGAAATTTTCGGTCTTGGACCGTCCAGAACCCCGGGCACTG    589
                     .||.||..|.|||||||||||.||.||.|||||..||.|.|||||.|..|
BL01342___asn    540 AGGGCTGGCAGAAATTTTCGGCCTCGGCCCGTCACGATCGCCGGGGAGCG    589

BSNT_01839___    590 GCATATTTAAAGGTATAAAAGAAATCCGCCCGGCTCATGCGCTGACATTT    639
                     |..|.||||||||..||||.||.||||||||||..||||||.|||..||.
BL01342___asn    590 GTGTTTTTAAAGGAGTAAAGGAGATCCGCCCGGGGCATGCGATGATTTTC    639

BSNT_01839___    640 TCCAAAGACGGACTTAA-TATTTGGCGTTATTGGAATGTTGAAAGCGAAA    688
                     ||.|||||||| .|||| ..|||||||.||.||||||||..|||||||.|
BL01342___asn    640 TCAAAAGACGG-TTTAACGGTTTGGCGCTACTGGAATGTGAAAAGCGAGA    688

BSNT_01839___    689 AACATACGGACAGTTTTGATGACACGGTTGCCAATGTCAGATCGTTATTT    738
                     |.|||||||||||.|||||.||.|||||.|..|||||..|.|||.|.|||
BL01342___asn    689 AGCATACGGACAGCTTTGACGAAACGGTGGAAAATGTGCGGTCGCTGTTT    738

BSNT_01839___    739 CAGGACGCGGTGACGCGGCAGCTTGTGTCGGATGTGCCTGTTTGCACATT    788
                     ||||||||.||.||..|||||||||||||.||||||||.||.||.||.||
BL01342___asn    739 CAGGACGCCGTTACAAGGCAGCTTGTGTCTGATGTGCCGGTATGTACGTT    788

BSNT_01839___    789 CCTATCAGGCGGTCTGGACTCAAGCGCAATTACAGCGATTGCGGCGGGC-    837
                     ..||||.||.||..|.||.||.|||||.|||||.||.|   ||||.|.| 
BL01342___asn    789 TTTATCTGGAGGGGTCGATTCGAGCGCCATTACCGCAA---CGGCCGCCA    835

BSNT_01839___    838 --CATTTTGAAAAGGAAGGAAAAGCACCGCTTCATACTTATTCGATTGAT    885
                       |||||.||.|..|||||.||.||.||.||||||||.|.||||||.|||
BL01342___asn    836 AGCATTTCGAGAGAGAAGGGAAGGCGCCCCTTCATACGTTTTCGATCGAT    885

BSNT_01839___    886 TACGAAGAGAACGATAAATTTTTTCAAG-CAAGCGCTTTTCAGCCGAATG    934
                     ||.|||||.||.||..|||.|||| |.| |||||.|.||||||||.||.|
BL01342___asn    886 TATGAAGACAATGAGCAATATTTT-ACGTCAAGCTCATTTCAGCCAAACG    934

BSNT_01839___    935 ATGACGGACCATGGATTGAAAAAATGACAGAGGCTTTCGGCACAACG---    981
                     ..|||||.||.||||||.||||||||.|.||.||.|||||   ||||   
BL01342___asn    935 CCGACGGCCCGTGGATTAAAAAAATGTCCGATGCATTCGG---AACGGTT    981

BSNT_01839___    982 CACCACAAATGCGTCATCAGCCAAAAAGATCTCATTGATCATTTGGAGGA   1031
                     ||.|||||.|||||.||...|||..|.||.||...||...|||||||.||
BL01342___asn    982 CATCACAATTGCGTGATATCCCAGGAGGAGCTGGCTGCCTATTTGGAAGA   1031

BSNT_01839___   1032 AGCTGTACTGGTCAAAGACTTGCCGGGAATGGCGGATGTCGACTCATCCC   1081
                     |||.||||||||....||.||||||||.|||||.||||||||.||.||||
BL01342___asn   1032 AGCCGTACTGGTTCGGGATTTGCCGGGGATGGCTGATGTCGATTCTTCCC   1081

BSNT_01839___   1082 TGCTGTGGTTTTGCCGGGAAATCAAAAAGGACTTTGTCGTCAGCCTATCG   1131
                     ||||.|||||.|||||.||.||.|||||.|||||||||||.|||||.||.
BL01342___asn   1082 TGCTATGGTTCTGCCGCGAGATTAAAAAAGACTTTGTCGTGAGCCTTTCA   1131

BSNT_01839___   1132 GGAGAGTGCGCGGATGAGATTTTCGGCGGGTACCCGTGGTTCCATACGGC   1181
                     ||.||.||||||||.||.|||||||||||.||.||.|||||||||.||||
BL01342___asn   1132 GGGGAATGCGCGGACGAAATTTTCGGCGGCTATCCTTGGTTCCATTCGGC   1181

BSNT_01839___   1182 AGATGTTGAGTCTGGCTTTCCATGGATGAGATCAACGGAGGAGCGGATCA   1231
                     |||.|.||.|...||.||.||||||||||||||||.|||.||.|||||  
BL01342___asn   1182 AGAAGATGTGAAAGGTTTCCCATGGATGAGATCAATGGAAGAACGGAT--   1229

BSNT_01839___   1232 AGCTGCTTTCT----GACTCATGGCAGAAAAAATTGAATCTGAAAGAATA   1277
                       |.|..||||    |||...|||||||||||..||||.||.|..|||||
BL01342___asn   1230 --CGGACTTCTGCAGGACGGCTGGCAGAAAAAGCTGAACCTCAGCGAATA   1277

BSNT_01839___   1278 CGTAAATGCCAAATATGAAGAAACCTTGGCAGAAACGCCATTATTAGATG   1327
                     .||.||.||.||||||||.|||||..|...||||||.||..|..|.||.|
BL01342___asn   1278 TGTGAAGGCAAAATATGAGGAAACAGTTAAAGAAACACCGCTGCTGGAAG   1327

BSNT_01839___   1328 GTGAAACGGGTGTGGATAAAGCAAGAAGACAGCTGTTCTATTTAAATATG   1377
                     |.||||||||||.|||.|||..|||.|||.|||||||.||.|||||||||
BL01342___asn   1328 GAGAAACGGGTGCGGAGAAACGAAGGAGAGAGCTGTTTTACTTAAATATG   1377

BSNT_01839___   1378 CTTTGGTTTATGACGAAC-CTTTTGGATCGGAAGGATCGCATGAGCATGG   1426
                     ||.||||||||||| ||| ||.||||||||.||.||..|.||||||||||
BL01342___asn   1378 CTCTGGTTTATGAC-AACGCTCTTGGATCGAAAAGACAGAATGAGCATGG   1426

BSNT_01839___   1427 GGGCGAGCCTGGAAGTGCGGGTGCCGTTCGCCGATCACCGGCTTGTGGAA   1476
                     |.||||||||.||.||..||||.|||||.||.||||||.|||||||.||.
BL01342___asn   1427 GTGCGAGCCTCGAGGTCAGGGTTCCGTTTGCAGATCACAGGCTTGTCGAG   1476

BSNT_01839___   1477 TATGTTTGGAATATTCCGTGGGAAATGAAAATGCATGATAATCGGGAAAA   1526
                     |||||.|||||||||||.|||||..|.||||||||||..|..||.|||||
BL01342___asn   1477 TATGTCTGGAATATTCCATGGGATGTCAAAATGCATGGCAGCCGTGAAAA   1526

BSNT_01839___   1527 AGGCATTTTACGCAAAGCGCTTGAAGGTATTTTGCCTGATGACATTCTGT   1576
                     ||||||.||.|||||.|||||.|||||.||||||||||||||..|.||||
BL01342___asn   1527 AGGCATCTTCCGCAAGGCGCTGGAAGGCATTTTGCCTGATGAAGTGCTGT   1576

BSNT_01839___   1577 ATCGCAAAAAAAGCCCGTATCCGAAAACACATCATCCGGAATATACAAAA   1626
                     |.||||||||||||||.|||||||||||.||.||.||||..|||||.|||
BL01342___asn   1577 ACCGCAAAAAAAGCCCATATCCGAAAACGCACCACCCGGCCTATACGAAA   1626

BSNT_01839___   1627 GGCGTCA---GCGAATGGCTGAAAACGA-TCA-----GAAGCCAAAAGGA   1667
                     |.|||.|   ||   ||||||     || |||     |.|| |||||.||
BL01342___asn   1627 GCCGTGATACGC---TGGCTG-----GAGTCATTGCTGGAG-CAAAAAGA   1667

BSNT_01839___   1668 CTCCGTGCTCCATACCTTGCT--GGACAGAAAACAATTAGATCAGCTTTT   1715
                     |||.|.||||.|| .|||.||  |.|.|||||| ||.|.||.|.|||..|
BL01342___asn   1668 CTCGGCGCTCTAT-GCTTTCTTAGAAAAGAAAA-AACTGGAGCGGCTGAT   1715

BSNT_01839___   1716 AGAAACGGAAGGCTCCTC-CTTCAAGGTGCCGTGGTTCGGACAGCTCATG   1764
                     .||.||||||||..|.|| .||||| ||.|||||||.||||||..|.|||
BL01342___asn   1716 TGAGACGGAAGGTGCATCATTTCAA-GTTCCGTGGTACGGACAATTGATG   1764

BSNT_01839___   1765 AAGGGACCTCAGCTGATCGCCCATCTTGCTCAAATTCATACATGGTTTGA   1814
                     ||||||||.||||||||||||||.|||||.|||||.|||||.||||||||
BL01342___asn   1765 AAGGGACCGCAGCTGATCGCCCACCTTGCCCAAATCCATACTTGGTTTGA   1814

BSNT_01839___   1815 AGCGTATCGCATTGATATTGATGAAGGATAA   1845
                     |...|||||.||||||||.||.||   ||||
BL01342___asn   1815 AAGTTATCGAATTGATATCGAGGA---ATAA   1842


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