Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01834 and BL01345
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01834___yisK.1.5803.seq
# -bsequence dna-align/BL01345___yisK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01834___yisK-BL01345___yisK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01834___yisK-BL01345___yisK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01834___yisK
# 2: BL01345___yisK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity: 667/955 (69.8%)
# Similarity: 667/955 (69.8%)
# Gaps: 98/955 (10.3%)
# Score: 2241.0
#
#
#=======================================
BSNT_01834___ 1 ATGAAATTTGCGACAGGGGAACTTTACAACCGAATGTTTGTCGGCCTGAT 50
|||||.||||||||||...|.||..|||.|||.|..|||||.||.||..|
BL01345___yis 1 ATGAAGTTTGCGACAGCAAAGCTGCACAGCCGTACATTTGTAGGGCTTGT 50
BSNT_01834___ 51 CATTGACGATGAGAAAATTATGGATTTGCAGAAGGCTGAAAAAAAACTGT 100
||| .||||||||.||.|||||||||||.|||||.||||||||.||||
BL01345___yis 51 CAT---GGATGAGAAGATAATGGATTTGCAAAAGGCGGAAAAAAAGCTGT 97
BSNT_01834___ 101 TTGAACTTGAGACGATTCCGGGATCGCTGATTGAATGTATCGCA---GAA 147
||||.|||||.|||||.||.|.|.||||.||.||||| ||.| ||.
BL01345___yis 98 TTGAGCTTGAAACGATACCTGAAACGCTTATCGAATG---CGTAAGCGAG 144
BSNT_01834___ 148 GGGGATAAATTCGTTGCG-CATG--CAAGGCAGCTGGCCGAGTGGGCAAA 194
||.||.||.||.| |.|| |||| .|| |||||.|..||.|||.||||
BL01345___yis 145 GGAGAGAAGTTTG-TCCGCCATGTCGAA--CAGCTAGTGGAATGGTCAAA 191
BSNT_01834___ 195 GAA-------ACCGAATGATGAGCTGGGATCATTTATGTATTCATTATCT 237
||| |.|||| || |||| ||.||.|.|||.|||.|..|.||.
BL01345___yis 192 GAAGAAAAACAGCGAA-GA-GAGC--GGTTCGTATATTTATCCGCTGTCA 237
BSNT_01834___ 238 GAGGTGAAGCTTCATGCACCCATT-CCGAAGCCATCAAAAAATATCATCT 286
||.||..|..|.|.||||||.||| ||||| ||....||||||.|.||||
BL01345___yis 238 GACGTCGATTTGCTTGCACCGATTCCCGAA-CCGCGGAAAAATGTGATCT 286
BSNT_01834___ 287 GCATCGGCAAAAACTACCGGGATCACGCGATTGAAATGGGGAGCGAGGCT 336
|||||||.|||||.||.||||||||.||||||||||||||.||.||.||.
BL01345___yis 287 GCATCGGAAAAAATTATCGGGATCATGCGATTGAAATGGGAAGTGAAGCA 336
BSNT_01834___ 337 GATATTCCGGAGCATCCGATGGTATTTACAAAATCGCCGGTAACGGTTAC 386
||||||||.||.|||...|||||.|||||||||.|||||....||||.|.
BL01345___yis 337 GATATTCCCGAACATATCATGGTGTTTACAAAAGCGCCGACTTCGGTCAT 386
BSNT_01834___ 387 GGG--GCATGGTGATATCGTAAAGAG--------CCATGAAGAGGTTACC 426
.|| .||||| |||.| |||.||||..||.|
BL01345___yis 387 CGGCCACATGG----------AAGGGATTGATGCCCACGAAGGCGTGA-- 424
BSNT_01834___ 427 TCTCA-----GCTTGATTATGAGGGAGAACTTGCTGTCGTGATCGGAAAA 471
|| |||.||||||||.||.||.||.||.||.||.|||||.|||
BL01345___yis 425 ---CAGAGGCGCTCGATTATGAAGGCGAGCTCGCGGTTGTCATCGGCAAA 471
BSNT_01834___ 472 AGCGGGACTCG-----CATTTCAAAAGAAGATGCATATGACCATGTTTTC 516
| ||||| |||..|.||||..||.||....|||.||||.|||
BL01345___yis 472 A-CGGGA----AAAAACATCCCGAAAGCTGAAGCGCTCGACTATGTGTTC 516
BSNT_01834___ 517 GGATATACGATTGTGAATGATATCACGGCGCGTGATCTGCAAAAAAGGCA 566
||.||||||||..|.||.|||.|.||||||||.|||||||||||.|||||
BL01345___yis 517 GGCTATACGATCATTAACGATGTGACGGCGCGCGATCTGCAAAAGAGGCA 566
BSNT_01834___ 567 TAAGCAGTTTTTTATCGGAAAAAGCTTGGATACGACATGTCCGATGGGGC 616
.|||||||||||||||||.||||||.|.|||.||||.||.||||||||||
BL01345___yis 567 CAAGCAGTTTTTTATCGGCAAAAGCCTTGATGCGACCTGCCCGATGGGGC 616
BSNT_01834___ 617 CCGTGCTTGTACATAAATCATCTATTCAGGAGCCAGAGCG-CCTCAAGGT 665
|..|.|||||||||||||||...|||.|.||.||.| |.| |||.|||||
BL01345___yis 617 CGTTTCTTGTACATAAATCAATGATTGAAGACCCCG-GTGACCTGAAGGT 665
BSNT_01834___ 666 TGAAACAAGAGTCAACGGCGAGCTGCGCCAATCCGGTTCGG----CAAGC 711
.||.||.|||||.||||||||.||.|||||.||.| || |||..
BL01345___yis 666 GGAGACGAGAGTGAACGGCGAACTCCGCCAGTCGG----GGAGCACAAAG 711
BSNT_01834___ 712 GATATGATCTTTTCC-ATTCCGGAATTAATTGAAACCCTCTCAAAGGGGA 760
||.||||| |||||| |||.|||||.|.||.|||||.||.||.||.||.|
BL01345___yis 712 GACATGAT-TTTTCCGATTGCGGAAATGATCGAAACGCTGTCCAAAGGAA 760
BSNT_01834___ 761 TGACGCTTGAAGCGGGCGACATTATTGCCACCGGTACGCCGTCTGGTGTC 810
||||||||||||||||.||.|||||.||.||||||||||||||.||.|||
BL01345___yis 761 TGACGCTTGAAGCGGGGGATATTATCGCAACCGGTACGCCGTCAGGAGTC 810
BSNT_01834___ 811 GGCAAGGGGTTTACGCCTCCAAAATTCTT--------GCGGTCAGGT-GA 851
|||||.||.||||..||.||.||.|||.| |||.|||||| ||
BL01345___yis 811 GGCAAAGGCTTTAATCCGCCGAAGTTCCTCCGAAAAGGCGATCAGGTCGA 860
BSNT_01834___ 852 CAAAATTGATATTACAATTGATCCGATCGGAACGCTGTCAAACCAAATTG 901
| |||||.||.||.||||||||||||||.||.||.|.|.||.
BL01345___yis 861 C---------ATTACGATCGAACCGATCGGAACGCTTTCCAATCCAGTTA 901
BSNT_01834___ 902 GCTGA 906
..|.|
BL01345___yis 902 AATAA 906
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