Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01864 and BL01347

See Amino acid alignment / Visit BSNT_01864 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01864.1.5803.seq
#    -bsequence dna-align/BL01347___yitR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01864-BL01347___yitR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01864-BL01347___yitR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01864
# 2: BL01347___yitR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     195/328 (59.5%)
# Similarity:   195/328 (59.5%)
# Gaps:          71/328 (21.6%)
# Score: 487.5
# 
#
#=======================================

BSNT_01864         1 GTGGAAATACGTATCGATTT---TTTAAT--------AATCTTTATTGCG     39
                             |.||||   |||   ||.|||        ||||..|...||.
BL01347___yit      1 --------ATGTAT---TTTCAATTGAATCCGATATCAATCGCTGCAGCC     39

BSNT_01864        40 CTGCTTTTCTTTTGGGTTGCTTATATG--GTTGGAATAAAAAAGCAAACA     87
                     |||||.||||||..||..||  |||||  ||.|||||||||||||||||.
BL01347___yit     40 CTGCTGTTCTTTGCGGCCGC--ATATGCAGTCGGAATAAAAAAGCAAACC     87

BSNT_01864        88 TGGATACTTTCC---GGTTT--CCGGGAGTCTCAAA---TACGTGACAAG    129
                     ||||||  ||.|   |||||  |||||      |||   ||.|.||..||
BL01347___yit     88 TGGATA--TTGCGGGGGTTTCGCCGGG------AAAGGGTAAGGGATCAG    129

BSNT_01864       130 GATCGTCTGGCTAGAATTGCGGGATACTTTTTTCTCAATTCGGGAATAT-    178
                     |.|...|||||.|.|||.||.||.||.||.|||.|.||....|||.|.| 
BL01347___yit    130 GTTAAGCTGGCGAAAATCGCTGGGTATTTCTTTTTGAACAGCGGATTTTT    179

BSNT_01864       179 -TTATTCTTTTAAATGGTTTTATTT-CATTTCAGGGA-CAAGA-TCAGCT    224
                      ||||  ||||||||||..||.||| ||  ||..|.| ||||| || ..|
BL01347___yit    180 GTTAT--TTTTAAATGGGGTTGTTTACA--TCCCGTATCAAGAGTC-TTT    224

BSNT_01864       225 GATACCTCCAATGATAGTGGCATACGGTGCCGGAGTT-----ATCATTTA    269
                     .|.||||.||...||..|.||.||||||     |.||     ||.|||||
BL01347___yit    225 TACACCTTCAGCCATTCTTGCCTACGGT-----ATTTGCACGATGATTTA    269

BSNT_01864       270 TGT--AAATAAAAAAT----TAATATAA    291
                     |||  ||| |||.|||    .||||.  
BL01347___yit    270 TGTTCAAA-AAACAATGGCCGAATAG--    294


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