Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04978 and BL01353

See Amino acid alignment / Visit BSNT_04978 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:10
# Commandline: needle
#    -asequence dna-align/BSNT_04978___yvgL.1.5803.seq
#    -bsequence dna-align/BL01353___yvgL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04978___yvgL-BL01353___yvgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04978___yvgL-BL01353___yvgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04978___yvgL
# 2: BL01353___yvgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 872
# Identity:     511/872 (58.6%)
# Similarity:   511/872 (58.6%)
# Gaps:         166/872 (19.0%)
# Score: 1269.0
# 
#
#=======================================

BSNT_04978___      1 ATGTTTAAGAAG----TATTCTATTTTCATCGCAGCCTTAAC------TG     40
                        ||.||.|||    |||| .|...||||.||.|..||.||      ||
BL01353___yvg      1 ---TTGAAAAAGGCAATATT-GACGGTCATAGCTGTATTGACGTCGGTTG     46

BSNT_04978___     41 CCTTTCTCCTTGCAGCAGGCTGTTCTTCAA--------------ACCAGT     76
                     ..||..||      ||.|||||    .|||              |.||| 
BL01353___yvg     47 TTTTGTTC------GCCGGCTG----CCAAGCGGAAAAAGGGGGATCAG-     85

BSNT_04978___     77 CTTCAACGGACAGCGAGAAAAAAGTAACGTTAACCATCTCAGCTGCCGCC    126
                       .|||.||.|||...||||||..|.|..|| ||..|.||.||.||.||.
BL01353___yvg     86 --CCAAGGGGCAGTCTGAAAAAGTTCAAATT-ACGGTTTCCGCGGCTGCG    132

BSNT_04978___    127 AG-CGCGGAGGAT---------GCACTTGAGGAAATCCAAAAAAAT----    162
                     || |.| .|||||         |.||||       |||       |    
BL01353___yvg    133 AGTCTC-AAGGATGTTTTAACAGAACTT-------TCC-------TCCGT    167

BSNT_04978___    163 -TATGAAAAAGAGCATCAAAATATTACCATCCAAG-ATAACTATGGCTCT    210
                      |||||.|||||.||||..|||.|..|.|| .||| .|||.|.|||.||.
BL01353___yvg    168 CTATGAGAAAGACCATCCGAATGTCTCTAT-AAAGTTTAATTTTGGTTCA    216

BSNT_04978___    211 TCCGGCGCCTTGCAAAAACAGATTTCTCAAGGAGCAGG-------AGCAG    253
                     ||.||.||.|||||..|.|||||       .||.||||       .||.|
BL01353___yvg    217 TCGGGTGCATTGCAGCAGCAGAT-------CGAACAGGGCGCTCCGGCTG    259

BSNT_04978___    254 ATCTGTTCTTCTCAGCTGCTGAGGATAAATTTAA-AAAGCTGGTGGATGA    302
                     ||.||||.||.||.||.|||||.||.|||||||| |.|| |.||.|||.|
BL01353___yvg    260 ATTTGTTTTTTTCTGCCGCTGAAGACAAATTTAATAGAG-TAGTTGATCA    308

BSNT_04978___    303 TGGAGAT-ATCGCAAAAAAAGAC-------AGCACTGATTTGGTCGGTAA    344
                     .|| |.| ||.|..|||||||||       |||       |||||     
BL01353___yvg    309 AGG-GTTAATTGACAAAAAAGACTCTGTCAAGC-------TGGTC-----    345

BSNT_04978___    345 TGAAA------TTGTGCTGGTCGTACCGAAAAACGG--AGATTCA-CCTG    385
                      ||||      |.||||||.||||.||||||   ||  |.|.||| |.||
BL01353___yvg    346 -GAAAACAGTCTGGTGCTGATCGTGCCGAAA---GGAAAAAGTCAGCATG    391

BSNT_04978___    386 TGACAAGCTTCAGCAATCTGGC---TGAATCA-----GAAAAAATCGCCC    427
                     |.|..|||||||...||.||||   |||  ||     ||||||||.||..
BL01353___yvg    392 TCAACAGCTTCAAGGATTTGGCGGATGA--CAAAGTCGAAAAAATTGCGA    439

BSNT_04978___    428 TTGGCACTCCGGAATCCGTACCGGCAGGAGCTTATGGGAAAGAATCACTG    477
                     |.||||..||.|||||.||.||.||.|||...||.|..||||||.|..||
BL01353___yvg    440 TCGGCAAACCTGAATCAGTGCCAGCCGGAAAATACGCAAAAGAAACGTTG    489

BSNT_04978___    478 ACAAAGC-TGTCTTTATGGGACAAAGTGAAGGATAAAATTGTGTATGGAA    526
                     ||.||.| ||.| .|||||...||||||.|...||||.|.||.||..|.|
BL01353___yvg    490 ACGAACCTTGAC-GTATGGTCTAAAGTGCAATCTAAAGTCGTCTACAGCA    538

BSNT_04978___    527 AAGACGTTCGCCAAGTTCTTTCTTATGTTGAAACCGGCAATGTAGACGCA    576
                     ||||.||..|.||.||.|||||||||.|.|||||.|||||.|..||.||.
BL01353___yvg    539 AAGATGTAAGGCAGGTCCTTTCTTATATCGAAACAGGCAACGCGGATGCC    588

BSNT_04978___    577 GGTATTGTTTATAAAACAGATGCCCTGGTC-TCGAAAAAGGTC--AACAT    623
                     ||.||.|||||....||.||.||||| .|| ||..|..|||||  .||..
BL01353___yvg    589 GGAATCGTTTACCGGACGGACGCCCT-TTCATCAGATCAGGTCGAGACCG    637

BSNT_04978___    624 TATTGACGAGGC-AAAAGCAGA--TACACACAGCCCAATTGTCTATCCGT    670
                     ||..|||  ||| |||||| ||  |.||.|||  ||.||||||||||||.
BL01353___yvg    638 TAGAGAC--GGCGAAAAGC-GATCTGCATACA--CCGATTGTCTATCCGC    682

BSNT_04978___    671 TAGGAATCGTAAAAGATACAAAACACCGTAAGGAA---GCGAAGGAATTT    717
                     |.|||||.||.|||.|||||||.|||   |.||||   .|..||||||||
BL01353___yvg    683 TCGGAATTGTGAAAAATACAAAGCAC---AGGGAACAGTCTGAGGAATTT    729

BSNT_04978___    718 TACGAATACCTGCAATCTGATGAAGCAATGAAAGTATTTGAGAAATATGG    767
                     ||..|||.|||||||...||..||||..|.||.|...|.||.||.||.||
BL01353___yvg    730 TATCAATTCCTGCAAAGCGACCAAGCCGTCAAGGCGATGGAAAAGTACGG    779

BSNT_04978___    768 CTTTACTGCCGAGTAG------    783
                     .||||      ||.||      
BL01353___yvg    780 ATTTA------AGAAGGGCTGA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04978 and BL01353

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
