Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01172 and BL01355

See Amino acid alignment / Visit BSNT_01172 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01172.1.5803.seq
#    -bsequence dna-align/BL01355___cotJB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01172-BL01355___cotJB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01172-BL01355___cotJB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01172
# 2: BL01355___cotJB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 293
# Identity:     174/293 (59.4%)
# Similarity:   174/293 (59.4%)
# Gaps:          58/293 (19.8%)
# Score: 489.5
# 
#
#=======================================

BSNT_01172         1 ATGGCAAAAAAGGTTGACG---------CC----GAATATTATCGTCA--     35
                                  .|||||         ||    ||.||||||    |  
BL01355___cot      1 -------------GTGACGAACTCTTTACCGCAAGACTATTAT----AAA     33

BSNT_01172        36 --GCTAGAGCAAATACAGGCTGCTGATTTTGTGCTTGTTGAGCTGAGTCT     83
                       |||..|..||||.|||||||.|||||||||..|.||||||||||..||
BL01355___cot     34 AGGCTTCATGAAATTCAGGCTGTTGATTTTGTCATCGTTGAGCTGATGCT     83

BSNT_01172        84 TTATTTAAATACACATCCTCATGATGAGGATGCGCTGAATCAATTCAATC    133
                     .||..|..|.||||||||..|||||...|||||..|.||.||||.|||.|
BL01355___cot     84 ATACCTTGACACACATCCCGATGATACCGATGCCATCAAACAATACAACC    133

BSNT_01172       134 AATATTCCGGCTATTCAAG-GCACTTAAAAAGACAGTTCGAATCCTCTTA    182
                     |.|||.||||.|.|||.|| ..|||.|||..|| ||||.|||||....||
BL01355___cot    134 AGTATGCCGGATTTTCCAGAAAACTGAAAGCGA-AGTTTGAATCAAAATA    182

BSNT_01172       183 CGGACC---GCTTC--TGCAGTTCGGCAACAGCCCCGCGGGCAAGGATTG    227
                     |||.||   |.|||  .|.||..||| |.|||          |.|||.|.
BL01355___cot    183 CGGCCCTTTGATTCAAGGAAGCCCGG-ATCAG----------ACGGAATC    221

BSNT_01172       228 GGATTGG----GGAAAAG--GGCCATGGCCGTGGCAAGTATAA    264
                     ..|||||    |||||||  |.||.|||||.||||||||.|||
BL01355___cot    222 CTATTGGAGCTGGAAAAGAAGTCCTTGGCCATGGCAAGTTTAA    264


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