Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03553 and BL01379

See Amino acid alignment / Visit BSNT_03553 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_03553___yqjG.1.5803.seq
#    -bsequence dna-align/BL01379___oxaA2.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03553___yqjG-BL01379___oxaA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03553___yqjG-BL01379___oxaA2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03553___yqjG
# 2: BL01379___oxaA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     583/875 (66.6%)
# Similarity:   583/875 (66.6%)
# Gaps:         100/875 (11.4%)
# Score: 1908.5
# 
#
#=======================================

BSNT_03553___      1 TTGTTAAAAACATATCAAA---AACTTTTGGCTATGGGTATCTTTTTGAT     47
                        ||.||.||..|.|.||   ||.|.||.||.|..|..||.||||||||
BL01379___oxa      1 ---TTGAACACGAAACTAAAGCAATTGTTTGCGACTGCAATGTTTTTGAT     47

BSNT_03553___     48 CGT-ATTATGCT------CGGGCAATGCTGCATTTGCAGCGACTAATCAG     90
                     |.| |.||||.|      .|..|||    ||.|..|||||.||       
BL01379___oxa     48 CATGACTATGTTTATAGGTGAACAA----GCTTCGGCAGCCAC-------     86

BSNT_03553___     91 GTGGGAGGCCTCAGCAACGTAGG---------TTTTTTCCACGATTATTT    131
                             |..|||||.||.|||         .||.||||||.|||||.|
BL01379___oxa     87 --------CGGCAGCACCGGAGGAAGCGACAACTTCTTCCACCATTATGT    128

BSNT_03553___    132 AATCGAACCGTTTTCCGCTCTGCTTAAGGGTGTTGCCGGGCTGTTTCACG    181
                     ..|.|..||.|||||.|..|||.|||||||..|.|||||..|.||.||||
BL01379___oxa    129 CGTGGTGCCTTTTTCAGAGCTGATTAAGGGAATCGCCGGAATCTTCCACG    178

BSNT_03553___    182 GAGAATACGGACTCTCTATTATCCTCGTAACCATTATTGTGCGTATAGTT    231
                     ||.|.||||||.|.||.|||||..|.||.|||||.||.||.||..|..|.
BL01379___oxa    179 GAAACTACGGATTGTCGATTATTTTTGTGACCATCATCGTCCGGGTTCTC    228

BSNT_03553___    232 GTATTGCCTTTGTTTGTCAATCAGTTCAAAAAACAGCGCATCTTCCAAGA    281
                     ||.||.||..||||||.|||.||||..|||||.|||||.....|.||.||
BL01379___oxa    229 GTTTTTCCGCTGTTTGCCAACCAGTATAAAAAGCAGCGGGCGATGCAGGA    278

BSNT_03553___    282 GAAAATGGCCGTTATTAAACCTCAGGTTGA-------CAGTATCCAGGTT    324
                     .||||||||..||.|.||||||.||.|.||       ||  |..||||||
BL01379___oxa    279 AAAAATGGCGCTTGTCAAACCTGAGCTGGATGCGATTCA--AAGCAGGTT    326

BSNT_03553___    325 AAATTGAAAAAGACGAAGGACCCTGAAAAACAAAAAGAGCTGCAAAT---    371
                     |     |||||||||||.|||||.|..||.|    ||||  |.||||   
BL01379___oxa    327 A-----AAAAAGACGAAAGACCCCGTGAAGC----AGAG--GGAAATCCA    365

BSNT_03553___    372 ---GGAAATGATGAAGCTGTATCAAGAGAACAACATCAATCCGCTTGCGA    418
                        |||.||||||.||||.||.|||.||.||||||||||||||||.||||
BL01379___oxa    366 GCAGGAGATGATGCAGCTTTACCAAAAGCACAACATCAATCCGCTGGCGA    415

BSNT_03553___    419 TGGGCTGTCTTCCAATGCTGATTCAGTCTCCGATTATGATTGGGCTTTAT    468
                     ||||||||||.||.|||||||||||||.|||||||.||||.||..|.|||
BL01379___oxa    416 TGGGCTGTCTGCCGATGCTGATTCAGTTTCCGATTCTGATCGGTTTCTAT    465

BSNT_03553___    469 TACGCGATTCGCTCAACACCTGAAATTGCGTCACACTCGTTTCTATGGTT    518
                     ||.|||||.|||||.||.|||||||||||.||.|||||.|||||.|||||
BL01379___oxa    466 TATGCGATCCGCTCGACGCCTGAAATTGCTTCGCACTCTTTTCTCTGGTT    515

BSNT_03553___    519 CAGTTTAGGGCAATCTGATATTCTCATGTCCCTTAGTGCAGGGATTATGT    568
                     .|...|.|||||.|||||||||.||.|.||..|.||.||.|||.|.||||
BL01379___oxa    516 TAACCTCGGGCATTCTGATATTATCGTATCTTTAAGCGCCGGGTTCATGT    565

BSNT_03553___    569 ATTTTGTCCAAGCCTATATCGCTCAAAAACTGAGCGC---GAAATATTCC    615
                     |||||.||||...||||.|..|||||||.||||.|||   |||      |
BL01379___oxa    566 ATTTTATCCAGTTCTATGTGTCTCAAAAGCTGAACGCACAGAA------C    609

BSNT_03553___    616 GCTGTCCCGCAAAACCCAGCGGCACAGCAATCCGCAAAATTGATGGTGTT    665
                     ||   ||....|||.||.|||||.|||||.|||||.|||.|.||||..||
BL01379___oxa    610 GC---CCAATCAAATCCGGCGGCTCAGCAGTCCGCCAAAATCATGGGCTT    656

BSNT_03553___    666 CATCTTCCCTGTAATGATGACGATTTTCTCGCTTAATGTTCCGGCAGCCC    715
                     |.|.||||||||||||||||||||.||.|||.|.|||||.||.|||||||
BL01379___oxa    657 CTTTTTCCCTGTAATGATGACGATCTTTTCGATCAATGTCCCTGCAGCCC    706

BSNT_03553___    716 TTCCCCTGTACTGGTTTACAAGCGGACTGTTTTTGACAGTGCAAAACATC    765
                     |.||.|||||||||.|.||||||||||||.||.||||..|.|||....||
BL01379___oxa    707 TGCCGCTGTACTGGCTGACAAGCGGACTGCTTCTGACGATTCAATCGGTC    756

BSNT_03553___    766 GTCCTTC----AGATGACGCATCATAAAAGTAAAAAA-----ACAGCCGC    806
                     ||.||||    ||.|.||    ||.||||..||||||     .|||||  
BL01379___oxa    757 GTTCTTCATCAAGTTTAC----CAAAAAAACAAAAAAGCCATTCAGCC--    800

BSNT_03553___    807 TCTTACTGAGTCGG---TGAAATAA    828
                        |.||||.||||   ..||||||
BL01379___oxa    801 ---TGCTGAATCGGCTACAAAATAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03553 and BL01379

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
