Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01857 and BL01388

See Amino acid alignment / Visit BSNT_01857 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01857___yisY.1.5803.seq
#    -bsequence dna-align/BL01388___yisY.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01857___yisY-BL01388___yisY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01857___yisY-BL01388___yisY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01857___yisY
# 2: BL01388___yisY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity:     488/927 (52.6%)
# Similarity:   488/927 (52.6%)
# Gaps:         264/927 (28.5%)
# Score: 1127.0
# 
#
#=======================================

BSNT_01857___      1 ATGGGGCATTACAT-----CAAAACCGAGGAGCATGTGACACTGTTTGTA     45
                     |||||..|||..||     ||.||||.||     .||.|..||||..||.
BL01388___yis      1 ATGGGATATTTTATCGAGGCAGAACCAAG-----CGTTAATCTGTACGTT     45

BSNT_01857___     46 GAGGATATCGGACAT-------GGAAGGCCGATCATCTTTTTGCACGGGT     88
                     ||.||.|||...|.|       |.||.||| ||..|.|||||||||||.|
BL01388___yis     46 GAAGACATCAATCCTCAAAGCGGCAAAGCC-ATTGTATTTTTGCACGGCT     94

BSNT_01857___     89 GGCCGTTGAATCAT----AAGATGTTTGAATATCAAATGAATGAGCTTCC    134
                     ||||.||.|..|||    |    |||||||||||||.|..|.||.|||.|
BL01388___yis     95 GGCCATTAAGCCATCTCCA----GTTTGAATATCAATTTGACGATCTTTC    140

BSNT_01857___    135 GAAAAGGGGATTTCGTTTTATCGGCGTTGATTTGCGGGGATATGGGCAAT    184
                     |..||.|||||..||.|.|||||||.||||.|.|||.||||..||||..|
BL01388___yis    141 GCGAAAGGGATACCGCTGTATCGGCATTGACTGGCGTGGATTCGGGCGTT    190

BSNT_01857___    185 CTGA----CCGCCCTTGGGA-AGGCTACGATTATGACACG-ATGGCCGAT    228
                     |.||    |||     |.|| .|||||..||||..|| || .||||.|||
BL01388___yis    191 CGGATAAGCCG-----GCGACGGGCTATAATTACAAC-CGTTTGGCTGAT    234

BSNT_01857___    229 GATGTGAAAGCAGTCATTTATACGCT--------GCAGCTTGAGAATGCG    270
                     |||.|....||.|||.||.|..||||        .||.|||.|     ||
BL01388___yis    235 GATATCCGCGCTGTCGTTGAGGCGCTTCAATTAAACAACTTCA-----CG    279

BSNT_01857___    271 ATTCTCGCCGGTTTTTCAATGGGCGGCGCCATTGCAATTCGTTATATGGC    320
                        ||.||||||..|||||..|||||||||||.|||.|.||.||||||.|
BL01388___yis    280 ---CTTGCCGGTCATTCAACCGGCGGCGCCATAGCACTCCGCTATATGTC    326

BSNT_01857___    321 AAGGCATGAAGGAGCCGATAT---------------TGATAAGCTGATTT    355
                                   |||||||               |.| ||||||.|||
BL01388___yis    327 --------------CCGATATAGGGGCGCTGGGGTCTCA-AAGCTGGTTT    361

BSNT_01857___    356 TACTGTCTGCAGCGGCCCCCGCG---TTTACAAAACGCCCGGGTTATCCG    402
                     |..|...|||.|||||.||.|.|   |||||                   
BL01388___yis    362 TGATCGATGCGGCGGCGCCTGTGGGATTTAC-------------------    392

BSNT_01857___    403 TACGGGATGAGGAA---GCAGGATATTGACGATATGATTGAATTG-TTCA    448
                            |||.|||   ||||        |.|        ||||| ||||
BL01388___yis    393 -------TGAAGAAACGGCAG--------CCA--------AATTGCTTCA    419

BSNT_01857___    449 --AAACG------GATCGGCCCAAAACACTGGCTGAT--------TTAGG    482
                       ||.||      |||||.|||||       |.||||        |.|..
BL01388___yis    420 GCAAGCGTCTAACGATCGTCCCAA-------GATGATGCGCGAAGTGACC    462

BSNT_01857___    483 GAAACAGTTTTT-----------TGAGAAAAAAGTGTCTCCAGAGCTTAG    521
                     ||.|| ||||||           |.|.|.||..|| ||||        ||
BL01388___yis    463 GACAC-GTTTTTCTTTCAATATATTACACAACCGT-TCTC--------AG    502

BSNT_01857___    522 GCAGTGGTTTCTCAATCTG-------ATGCTGGAGGCTTCCTCCTACGGG    564
                     .|.|| .|||.||||| ||       |.||.|.|||||          ||
BL01388___yis    503 ACTGT-TTTTTTCAAT-TGGGATTGCAGGCGGCAGGCT----------GG    540

BSNT_01857___    565 ACGATCCACTCGGGCATCGCA---TTAAGAGACGAAGATC----------    601
                     .|||...|..|||.|||||.|   .|.|||||.||..|.|          
BL01388___yis    541 TCGACAAAAGCGGTCATCGAAATGCTGAGAGATGAGAAACTGTATGATGA    590

BSNT_01857___    602 TCAGGAAGGAACTTGCTGCAATCAAGGTGCCGACGCTGATCCTGCACGGG    651
                     ||.|||| .||.|.|||||  ||.||       |..|.|||.|.|||||.
BL01388___yis    591 TCCGGAA-AAAGTCGCTGC--TCCAG-------CCTTAATCATTCACGGT    630

BSNT_01857___    652 AGAAAGGATAA---AATTGCGCCGTTTG----ATTTTGCGAAAGAGTTGA    694
                     |...|.||.||   .|||   |||||||    |    ||.||.|||.|.|
BL01388___yis    631 ATTCAAGACAAGGTGATT---CCGTTTGCACAA----GCAAAGGAGCTCA    673

BSNT_01857___    695 AGCGCGGCATCAAACAGTCGGAATTGGTTCCGTTTGCAA-ACAGCGGGCA    743
                     ..|||...||||.|.|.||..|..|.||||||||| ||| |||||||.||
BL01388___yis    674 GCCGCAAAATCAGAAATTCATATCTTGTTCCGTTT-CAATACAGCGGACA    722

BSNT_01857___    744 CGGAGCATTTTATGAGGAA---AAAGAGAAGATCAACAGTTTGATT---G    787
                     |||..||||.|..||||||   |||   |.|.||||   |..||||   .
BL01388___yis    723 CGGTCCATTCTGGGAGGAACGCAAA---ATGTTCAA---TCGGATTTTAA    766

BSNT_01857___    788 CGCAGTTCTCCAACTCATAA-------    807
                     ||||.||          ||.       
BL01388___yis    767 CGCAATT----------TATCGGTTGA    783


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