Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04488 and BL01414
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_04488___yteA.1.5803.seq
# -bsequence dna-align/BL01414___yteA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04488___yteA-BL01414___yteA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04488___yteA-BL01414___yteA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04488___yteA
# 2: BL01414___yteA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 819
# Identity: 502/819 (61.3%)
# Similarity: 502/819 (61.3%)
# Gaps: 162/819 (19.8%)
# Score: 1435.0
#
#
#=======================================
BSNT_04488___ 1 TTGCTTACGAAAGAACAGCTTCAGCATTTAA-----AAAATGAACTGGAA 45
.||||.||.||||||||| ||.| || || |||||||||||
BL01414___yte 1 GTGCTAACAAAAGAACAG-TTGA-CA---AAACTCGAAAATGAACTG--- 42
BSNT_04488___ 46 CAAA--CG--AAAAAAGATATCTTAAACCGTTTCAAAGACAATGATCATT 91
||| || |||.||.|.|||.|.|.|||.||.|||||.||.|..||||
BL01414___yte 43 -AAAGCCGGAAAAGAACAGATCATCAGCCGCTTTAAAGAAAACGGACATT 91
BSNT_04488___ 92 TT--CA-----GCTTAACTCAGCATTTCCTTATGATTCGTGGGGTGAGCT 134
|| || || .||.||.|..||| .|.|||..|||.||.||
BL01414___yte 92 TTGGCATCGATGC--GACGCACCCGTTC-----AACTCGACGGGCGATCT 134
BSNT_04488___ 135 TTCGGCATACGACAACCATCCCGGCGATCAGGCGACAGAACTTTACGAGC 184
||||||.||.|||||.|||||.||.|||.|.|..||||||||.|||||.|
BL01414___yte 135 TTCGGCTTATGACAATCATCCAGGAGATGAAGGTACAGAACTGTACGAAC 184
BSNT_04488___ 185 GTGAGAAAGACATCGCTCTAGACTTG--CATGAGCGAGAGCACCTTCGGG 232
|.||.||||||.|.||.|| ..||| |||||..|||||||..|.|..|
BL01414___yte 185 GCGAAAAAGACCTTGCCCT--TTTTGAACATGAAAGAGAGCATTTACACG 232
BSNT_04488___ 233 ACATTGAGCATTCATTGAAGGC--GATAGAAAACGGTACGTATGGCATTT 280
|.||.||.|||.|.|| ||.| |||.|||||.||.||.||.|||...|
BL01414___yte 233 ATATCGAACATGCTTT--AGCCATGATCGAAAAAGGAACATACGGCCGCT 280
BSNT_04488___ 281 GTGAAGTCAGCGGAAAGGAAATCCCGTTCGAACGACTTGAAG--CG--CT 326
|||||||..||||||||||.|||||||..|||.|.|| | || ||
BL01414___yte 281 GTGAAGTATGCGGAAAGGACATCCCGTATGAAAGGCT----GTCCGTACT 326
BSNT_04488___ 327 TCCGACTGCCACAACCCTCGCGGAGT----ATTCGTCACAGGA-CGT--- 368
|||.||.||.||.| ||.|.||| |||||||| | |||
BL01414___yte 327 TCCAACCGCAACGA----CGTGCAGTGAACATTCGTCA----ACCGTCTC 368
BSNT_04488___ 369 GGTTTCCAAGGACCGTCCGATTGAAGAAGAA---------ACACCATTCG 409
.|||||.||.||.||.||||||||.|||||| .|.||.||.|
BL01414___yte 369 CGTTTCAAAAGATCGGCCGATTGAGGAAGAAGTGCTGAACCCGCCGTTTG 418
BSNT_04488___ 410 GGCAATTTGAATTTGATGATGATGAAGAAA---TCAGAGCGCCATATGA- 455
|.||.||||||...||.||.||.||.|||| || .||||.||
BL01414___yte 419 GACATTTTGAACAAGACGAGGACGATGAAAATGTC------GCATACGAT 462
BSNT_04488___ 456 -CAGTGAGGATTCCTATCAGGATGTCGAAAAATATGGTAACTCACAAACG 504
|| |||||..|.||.||||||||||||...||.||.||.||..|||||
BL01414___yte 463 TCA--GAGGACGCTTACCAGGATGTCGAACGCTACGGCAATTCGGAAACG 510
BSNT_04488___ 505 CCGCAGGATATGGAAAACCC--TCCGCTAAGCTATGAC---------GAT 543
||.||.|||.||| || ||||| ||.||.| |||
BL01414___yte 511 CCTCAAGATCTGG-----CCGTTCCGC----CTCTGTCATACAGCCAGAT 551
BSNT_04488___ 544 ----ATGACGATGAATGCCGAAGAGAATATCGGCAATACGGAGTCTTACG 589
||| || |.|| ||||||....||||..||..|||...|||||
BL01414___yte 552 GTACATG--GA-GTAT---GAAGAGCCGCTCGGATATGTGGAAGATTACG 595
BSNT_04488___ 590 AAAATTTCAT--CGCTACAGATATCACTGGAAAAGAAATTACCGTTTATC 637
||||.| || |||.|||||.||.||.||||||||..|||||||.||||
BL01414___yte 596 AAAACT--ATGCCGCAACAGACATTACCGGAAAAGATGTTACCGTCTATC 643
BSNT_04488___ 638 -----AAAGCAGAGCCCATGAGCGCTATGAAGAAGAACTTGACGAAGAGG 682
||||.| ||.||....||||||||....|||||.|||||.|
BL01414___yte 644 CGACGAAAGAA-----CACGAAAAATATGAAGACCTGCTTGATGAAGAAG 688
BSNT_04488___ 683 GAATCATGACCACATTCGGCGATCTCCACGCTGATTGA------------ 720
|.|||||||||.|.|||||||||||||..|||.| |||
BL01414___yte 689 GCATCATGACCTCTTTCGGCGATCTCCCGGCTTA-TGAAAAGGATCCTTA 737
BSNT_04488___ 720 ------------------- 720
BL01414___yte 738 TACTGAAGACGACGACTAA 756
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