Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04500 and BL01416

See Amino acid alignment / Visit BSNT_04500 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:42
# Commandline: needle
#    -asequence dna-align/BSNT_04500___glgA.1.5803.seq
#    -bsequence dna-align/BL01416___glgA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04500___glgA-BL01416___glgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04500___glgA-BL01416___glgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04500___glgA
# 2: BL01416___glgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1565
# Identity:    1035/1565 (66.1%)
# Similarity:  1035/1565 (66.1%)
# Gaps:         220/1565 (14.1%)
# Score: 3112.5
# 
#
#=======================================

BSNT_04500___      1 TTGAAGATATTACTTGCTGTGTCAGAATGCACCCCATTTGTTAAATCAGG     50
                     |||||..|.|||.|||||||.||.|||||....||.||||||||||||||
BL01416___glg      1 TTGAAAGTCTTATTTGCTGTTTCTGAATGTGTGCCGTTTGTTAAATCAGG     50

BSNT_04500___     51 AGGTCTTGCCGATGTAGCAGGCGCTCTGCCAAAGGCACTTGCGCGATTAG    100
                     .||.||.||||||||.||.||.||.||.||.||.|..||.||.|..||||
BL01416___glg     51 CGGGCTCGCCGATGTCGCCGGGGCGCTCCCGAAAGAGCTCGCCCTTTTAG    100

BSNT_04500___    101 GCAATGCAGTAG-------CTGTGATGCTGCCGAAGTACAGCCAAATACC    143
                     |||      |||       | ||.|||.|||||||.|||||....||..|
BL01416___glg    101 GCA------TAGAAACGGTC-GTCATGATGCCGAAATACAGTTTGATTGC    143

BSNT_04500___    144 TGAA-CCGTGGAAAAAG-CGTATGAAAAAAAAGGCTGAGTG-TACGGTAG    190
                     .||| .|||  .|.||| ||.|||...||||.||||||.|| .|.|.|.|
BL01416___glg    144 GGAAGACGT--CAGAAGACGGATGGTTAAAACGGCTGAATGCGAGGTTCG    191

BSNT_04500___    191 CTGTCGGCTGGCGTCA-GCAATATTGCGGAATTGAACATATGGCC--GAA    237
                     | |||||.||||| || |||.|.||||||.||||||||     ||  |||
BL01416___glg    192 C-GTCGGGTGGCG-CAGGCAGTTTTGCGGCATTGAACA-----CCTTGAA    234

BSNT_04500___    238 GACGATGTGA-------ATTA-TTACTTCATCGACAATGAGTACTATTTC    279
                     .|.||.| ||       |||| ||.|||.|||    |||.|||.|||||.
BL01416___glg    235 CATGACG-GAGTTTCCTATTATTTTCTTGATC----ATGGGTATTATTTT    279

BSNT_04500___    280 AACAGGGATTCGTTGTACGGGCATTATGATGACGGTGAGCGGTTTGCCTA    329
                     ||..|||||||..|.|||||.|||||||||||.||.|||||||||||.|.
BL01416___glg    280 AATCGGGATTCCCTTTACGGCCATTATGATGATGGAGAGCGGTTTGCTTT    329

BSNT_04500___    330 TTTTTCAAGAGCTGTGCTGGAGGC--------TGCCAAAGTTGTGAATGT    371
                     |||.||..|.|||||..||||.||        .||        |||||.|
BL01416___glg    330 TTTCTCGCGGGCTGTTTTGGAAGCACTATACGCGC--------TGAATTT    371

BSNT_04500___    372 TCCAGCCGATATTGTTCATACTCACGATTGGCATACAGCGATGGTCAATT    421
                     |..|||.|||.|..|.|||||.|||||||||||.||||.|||||||||||
BL01416___glg    372 TGAAGCTGATGTCATCCATACCCACGATTGGCACACAGGGATGGTCAATT    421

BSNT_04500___    422 ATTTGCTGAAAGAGGAGTACAGAAAACATCCTTTTTATGAACGGATGAAA    471
                     ||||..|.|||||.||.||..|||||.|.||.||.|||.|.|..||||||
BL01416___glg    422 ATTTATTAAAAGAAGAATATCGAAAAAAGCCGTTCTATCAGCACATGAAA    471

BSNT_04500___    472 AGCGTGCTCACGATCCACAACCTGCAGTTTCAAGGCATATTCCCTCCTGA    521
                     |||||..|.||.||.||.|||||.||.|||||.|||||.|||||    ||
BL01416___glg    472 AGCGTATTTACAATTCATAACCTTCAATTTCAGGGCATTTTCCC----GA    517

BSNT_04500___    522 TG--------TCACACATGACTTGCTGGGTCTTGAGATGGATCATTTTCA    563
                     .|        |    ||||||.||||.||.|||||.||....|| |||||
BL01416___glg    518 AGGAAGCGGTT----CATGACCTGCTCGGACTTGATATTTCCCA-TTTCA    562

BSNT_04500___    564 TTA-TGAAAGGTTAGAATGCAATAGTTTT--------GTTAATTTTATG-    603
                     ..| .||||.|.|.|        ||||||        .||||||.|||| 
BL01416___glg    563 CGACCGAAAAGCTCG--------AGTTTTATGGGAACATTAATTATATGA    604

BSNT_04500___    604 AAGGCGGGCATCATTGCGGCTGATCATGTGACGACTGTGAGCCCCACTTA    653
                     ||||| |||||.||.||.||||||||.|||||.||.||.||.||.||.||
BL01416___glg    605 AAGGC-GGCATTATCGCCGCTGATCAGGTGACAACGGTCAGTCCGACGTA    653

BSNT_04500___    654 CAGAAATGAAATCTTGACGCCGTATTATGGTGAGCAGCTGGAGCAGGTTT    703
                     |.|..|||||||||||||.||.||.||.||.||||.|||.||...|||..
BL01416___glg    654 CCGCGATGAAATCTTGACTCCATACTACGGCGAGCGGCTTGAAGGGGTGC    703

BSNT_04500___    704 TG-----CAATATAGGGAAGATGATG---TAACCGGCATATTAAATGGCA    745
                     ||     |||      ||||  ||||   |.||.|||||.|||||.||.|
BL01416___glg    704 TGTCAGACAA------GAAG--GATGCACTGACAGGCATTTTAAACGGGA    745

BSNT_04500___    746 TTGATGATACGTTCTATCAGCCGAAAAGCGACCCTTATATA-GAGGCGCA    794
                     ||||.|||..|.|.||            |||||||| ||.| ||..||||
BL01416___glg    746 TTGACGATGTGCTGTA------------CGACCCTT-TAAACGATCCGCA    782

BSNT_04500___    795 -ATACGATTCAGGGGATC-TTGC-ATG----CAA----GCTGGAAAAC--    831
                      || |||||      ||| ||.| |||    |||    |..|||||||  
BL01416___glg    783 CAT-CGATT------ATCATTACGATGCCGTCAACCGGGACGGAAAACGG    825

BSNT_04500___    832 -AAAACGAAGC-----TTCAGCGGCGGATGGGGCTTCCAGAGAAAAACGA    875
                      ||||..||||     |.|||..|....|.||.||.||.|.|||..|.||
BL01416___glg    826 AAAAATAAAGCCGTGATCCAGAAGACATTCGGTCTGCCGGTGAATGAAGA    875

BSNT_04500___    876 TATTCCGCTGATCAGTATGGTGACAAGGCTCACTAAACAAAAGGGGCTT-    924
                     .||||||||.|||||.||||||.|||||||.||.||.||||| .||||| 
BL01416___glg    876 CATTCCGCTCATCAGCATGGTGGCAAGGCTGACGAAGCAAAA-AGGCTTC    924

BSNT_04500___    925 GATCTGGTC---CGCAGAATTATGCACGAACTTCTTGAGGAGCAAGACAT    971
                     |||.||.||   || .|.||  ||||.|||||..||||.||..|||||||
BL01416___glg    925 GATTTGATCAAGCG-GGTAT--TGCATGAACTGTTTGAAGAAGAAGACAT    971

BSNT_04500___    972 ACAGCTGGTTGTGCTGGGCACAGGAGAA-CGTGAATTTGAAGATTATTTC   1020
                     .||||||.|.||..|.||.||.|||||| || |||||||||.||||.|||
BL01416___glg    972 GCAGCTGATCGTTTTAGGAACCGGAGAAGCG-GAATTTGAAAATTACTTC   1020

BSNT_04500___   1021 CG--GTATGCAGAATTTGCTTTTCATGAGAAGTGCCGGGCTTATATCGGA   1068
                     ||  .||||.||.|  ||||||||..||.|.||||..|||.||||||||.
BL01416___glg   1021 CGCTATATGGAGCA--TGCTTTTCCGGACAGGTGCAAGGCGTATATCGGT   1068

BSNT_04500___   1069 TTTGATGAGCCGCT-AGCC-CATCAAATTTAT---GCGGGCTCTGATATG   1113
                     |||.||||.||||| |||| ||  |.||||||   |||.||   |||.|.
BL01416___glg   1069 TTTCATGAACCGCTCAGCCGCA--AGATTTATGCCGCGAGC---GATCTT   1113

BSNT_04500___   1114 TTTTTGATGCCGTCGAAATTTGAGCCGTGCGGTTTGGGGCAGCTCATTGC   1163
                     ||..|||||||.||.|||||.||||||||||||.|.||.|||||.|||||
BL01416___glg   1114 TTCCTGATGCCTTCAAAATTCGAGCCGTGCGGTCTTGGACAGCTGATTGC   1163

BSNT_04500___   1164 TCTTCA-ATATGGCGCCATTCCGATTGTCAGGGAAACGGGCGGTCTTTAC   1212
                      |.||| .||.|||||..|.|||.|||||||||||||.|||||.|||.|.
BL01416___glg   1164 -CCTCAGGTACGGCGCGGTGCCGGTTGTCAGGGAAACAGGCGGGCTTCAT   1212

BSNT_04500___   1213 GACAC--TGTCCGTGCCTATCAGGAGGAAGA----GGGAACGGGCAATGG   1256
                     ||.||  ||.||  ||.||.|.|||  ||.|    |.|||  |||||.||
BL01416___glg   1213 GATACGGTGACC--GCTTACCGGGA--AACAACCGGTGAA--GGCAACGG   1256

BSNT_04500___   1257 CTTTACGTTTTCCGCC---TTTAATGCGCATGATTTGAAATTTACGATTG   1303
                     .||||||||   ||||   |||||.||.||||||.||||...||||||..
BL01416___glg   1257 TTTTACGTT---CGCCCATTTTAACGCCCATGATATGAAGCATACGATCA   1303

BSNT_04500___   1304 AACGAGCGCTGGCGTTTTATCGCCAACAGGATGTATGGAAG--------A   1345
                     ||.||||.|||.|.|||||||    |||||    |..||||        |
BL01416___glg   1304 AAAGAGCACTGTCATTTTATC----ACAGG----AAAGAAGAGTGGGGCA   1345

BSNT_04500___   1346 GCATCGTGAAGACCGCTATGAATGCA---GATTACAGCTGGGGGAAGTCG   1392
                     |.|||||..|.|..||.||||   ||   |||..||||||||....|||.
BL01416___glg   1346 GGATCGTTCAAAAAGCGATGA---CACATGATGTCAGCTGGGCTTTGTCA   1392

BSNT_04500___   1393 GCTAAAGAGTATCAGCGTATTTTCGAG-CAGGTGACAAGGAGTGGACG-G   1440
                     ||.....|||||||||| .||.|..|| |.||.||.||.| |.|||.| |
BL01416___glg   1393 GCCCGTCAGTATCAGCG-GTTATACAGCCGGGAGATAAAG-GGGGAAGCG   1440

BSNT_04500___   1441 GATGTTCTCGAGTAA   1455
                     .||||||||.|||||
BL01416___glg   1441 CATGTTCTCAAGTAA   1455


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