Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03215 and BL01430

See Amino acid alignment / Visit BSNT_03215 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03215___kamA.1.5803.seq
#    -bsequence dna-align/BL01430___kamA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03215___kamA-BL01430___kamA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03215___kamA-BL01430___kamA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03215___kamA
# 2: BL01430___kamA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1456
# Identity:    1067/1456 (73.3%)
# Similarity:  1067/1456 (73.3%)
# Gaps:          86/1456 ( 5.9%)
# Score: 3785.5
# 
#
#=======================================

BSNT_03215___      1 TTGAAAAACAAATG----GTATAAACCGAAACGGCATTGGAAGGAGATCG     46
                     .||.|||||    |    ||.|||.||||||.||||.||||||||.||.|
BL01430___kam      1 ATGGAAAAC----GGTCTGTTTAAGCCGAAAAGGCACTGGAAGGATATTG     46

BSNT_03215___     47 AGTTATGGAAGGACGTTCCGGAAGAGAAATGGAACGATTGGCTTTGGCAG     96
                     ||.|.|||||.||.|||||.||.||.|||||||||||.|||.|.||||||
BL01430___kam     47 AGCTTTGGAAAGATGTTCCCGAGGAAAAATGGAACGACTGGATATGGCAG     96

BSNT_03215___     97 CTGACACATACTGTAAGAACGTTAGATGATTTAAAGAAAGTCATCAATCT    146
                     |||||..|.||.||.||||||.|.||.|||||.||.||||||.|||||||
BL01430___kam     97 CTGACCAACACCGTCAGAACGCTTGAAGATTTGAAAAAAGTCGTCAATCT    146

BSNT_03215___    147 GACTGAGGATGAAGAGGAAGGCGTCAGAATTTCTACTAAAACGATCCCCT    196
                     .||..|.||.|||||.|||||.||..||||.||.||.||.||||||||.|
BL01430___kam    147 TACGAAAGAGGAAGAAGAAGGGGTGCGAATCTCCACAAAGACGATCCCTT    196

BSNT_03215___    197 TAAATATTACACCTTACTATGCTTCTTTAATGGACCCCGACAATCCGAGA    246
                     |||||||.||.||.||.||.||.||..|.|||.|.||.||..|||||.|.
BL01430___kam    197 TAAATATCACGCCGTATTACGCCTCACTGATGAATCCGGATGATCCGCGC    246

BSNT_03215___    247 TGCCCGGTACGCATGCAGTCTGTGCCGCTTTCTGAAGAAATGCACAAAAC    296
                     ||.|||.|..|.||||||||.||||||||..|.|||||||||||||||||
BL01430___kam    247 TGTCCGATCAGAATGCAGTCGGTGCCGCTCGCAGAAGAAATGCACAAAAC    296

BSNT_03215___    297 AAAATACGATCTGGAAGACCCGCTTCATGAGGATGAAGATTCACCGGTAC    346
                     |||||||||.||.|||||.||.||||||||||||||||||||.||.||.|
BL01430___kam    297 AAAATACGACCTTGAAGATCCCCTTCATGAGGATGAAGATTCGCCTGTCC    346

BSNT_03215___    347 CCGGTCTGACACACCGCTATCCCGACCGTGTGCTGTTTCTTGTCACGAAT    396
                     ||||..|.||.|||||||||||.|||||.||..|||||||.|||||.|||
BL01430___kam    347 CCGGCTTAACCCACCGCTATCCGGACCGGGTTTTGTTTCTCGTCACTAAT    396

BSNT_03215___    397 CAATGTTCTATGTACTGCCGCTACTGCACAAGAAGGCGCTTTTCCGGACA    446
                     |||||.||.|||||.|||.|.|||||.|||||..||||.||||||||.||
BL01430___kam    397 CAATGCTCGATGTATTGCAGATACTGTACAAGGCGGCGTTTTTCCGGGCA    446

BSNT_03215___    447 AATCGGAATGGGCGTCCCAAAAAAACAGCTTGATGCTGCAATTGCTTATA    496
                     ||||||.||||||||.||.|||||.|||||.|||...||.||.|..||||
BL01430___kam    447 AATCGGCATGGGCGTGCCGAAAAAGCAGCTCGATCAGGCGATCGGCTATA    496

BSNT_03215___    497 TCCGGGAAACACCCGAAATCCGCGATTGT-TTAATTTCAGGCGGTGATGG    545
                     |.|||||.||.||.||..||.|.|| ||| .|.||.||||||||.||.||
BL01430___kam    497 TTCGGGATACGCCTGATGTCAGGGA-TGTGCTGATATCAGGCGGGGACGG    545

BSNT_03215___    546 GCTGCTCATCAACGACCAAATTTTAGAATATATTTTAAAAGAGCTGCGCA    595
                     .||.|||||.||||||||.||..|.|||||||||||.|||.|.||.|||.
BL01430___kam    546 CCTCCTCATTAACGACCAGATCCTTGAATATATTTTGAAAAACCTCCGCG    595

BSNT_03215___    596 GCATTCCGCATCTGGAAGTCATCAGAATCGGAACAAGAGCGCCCGTTGTC    645
                     .|||||||||..|||||.||||..|.|||||.|||||.||.||.||.|||
BL01430___kam    596 CCATTCCGCACGTGGAAATCATTCGGATCGGCACAAGGGCCCCAGTCGTC    645

BSNT_03215___    646 TTTCCGCAGCGCATTACCGATCATCTGTGCGAG-ATATTGAAAAAATATC    694
                     ||.||||||||.||||||||..|.||.||| || ||.||||||||.||||
BL01430___kam    646 TTCCCGCAGCGGATTACCGACAAGCTATGC-AGCATTTTGAAAAAGTATC    694

BSNT_03215___    695 ATCCGGTCTGGCTGAATACCCATTTTAACACAAGCATCGAAATGACAGAA    744
                     ||||.||||||||||||||.|||||.|||||.|||||.|||||.|| |||
BL01430___kam    695 ATCCCGTCTGGCTGAATACGCATTTCAACACGAGCATTGAAATCAC-GAA    743

BSNT_03215___    745 -GAATCCGTTGAGGCATGTGAAAAGCTGGTGAACGCGGGAGTGCCGGTCG    793
                      |||.|....||.||.|||||.||||||||.||.||.||.||||||||||
BL01430___kam    744 GGAAGCGAAGGAAGCCTGTGAGAAGCTGGTCAATGCCGGGGTGCCGGTCG    793

BSNT_03215___    794 GAAATCAGGCTGTCGTATTAGCAGGTATTAATGA-TTCGGTTCCAATTAT    842
                     |.|||||.||.||..|.||.|||||.|||||||| ..||.|||| |||||
BL01430___kam    794 GCAATCAAGCCGTTATTTTGGCAGGCATTAATGACAGCGTTTCC-ATTAT    842

BSNT_03215___    843 GAAAAAGCTCATGCATGACTTGGTAAAAATCAGAGTCCGTCCTTATTATA    892
                     |||||||||.||||||||.|||||.|||||||||||||||||.|||||||
BL01430___kam    843 GAAAAAGCTGATGCATGATTTGGTGAAAATCAGAGTCCGTCCGTATTATA    892

BSNT_03215___    893 TTTACCAATGTGATCTGTCAGAGGGAATCGGGCATTTCAGAGCTCCTGTT    942
                     ||||.|||||.||..||||.||.||||||||.||||||.||||.|||||.
BL01430___kam    893 TTTATCAATGCGACTTGTCTGAAGGAATCGGCCATTTCCGAGCGCCTGTA    942

BSNT_03215___    943 TCCAAAGGTTTGGAGATCATTGAAGGGCTGAGAGGCCATACCTCAGGCTA    992
                     ||.||.||..|.||.|||||||||||..||.|.|||||.||....|||||
BL01430___kam    943 TCAAAGGGGCTTGAAATCATTGAAGGCTTGCGCGGCCACACGAGCGGCTA    992

BSNT_03215___    993 TGCGGTTCCTACCTTTGTCGTTGACGCACCAGGCGGAGGAGGTAAAATCG   1042
                     |||.||.||.|||||||||||||||||.||.||||||||.||.|||||||
BL01430___kam    993 TGCAGTGCCGACCTTTGTCGTTGACGCGCCGGGCGGAGGCGGGAAAATCG   1042

BSNT_03215___   1043 CCCTGCAGCCAAACTATGTCCTGTCACAAAGTCCTGACAAAGTGACCT--   1090
                     ||.|.|||||.||.||..|..|.||.|||||.||.||.|||||  |.|  
BL01430___kam   1043 CCATCCAGCCGAATTACTTGATTTCGCAAAGCCCCGATAAAGT--CGTGC   1090

BSNT_03215___   1091 TAAGAAATTTTGAAGGTGTGATTACGTCATATCCGGAACCAGAGAATTAT   1140
                     |..|.|||||||||||.||.||||||||.|||||.||.||.||.||.|||
BL01430___kam   1091 TCCGCAATTTTGAAGGCGTCATTACGTCGTATCCTGAGCCTGAAAACTAT   1140

BSNT_03215___   1141 ATCCCCAATCAG------GCAGACGCCTATTTTGAGTCCG---TTTTCCC   1181
                     .|      ||.|      ||.||||.||||||||   |||   |.|||||
BL01430___kam   1141 GT------TCCGGGGAGAGCGGACGACTATTTTG---CCGAAATCTTCCC   1181

BSNT_03215___   1182 TGA-------AACCGCTGACAAAAAGGAGCCGATCGGGCTGAGTGCCATT   1224
                     |||       ||    .||.|||.||||   ||||||..|....||.||.
BL01430___kam   1182 TGATGTGATGAA----GGAAAAAGAGGA---GATCGGCATATCGGCAATC   1224

BSNT_03215___   1225 TTTGCTGACAAAGAAGTTTCGTTTACAC-------CTGAAAATG--TAGA   1265
                     |.|||.||..|||...||||.|..||||       ||.||||.|  |.||
BL01430___kam   1225 TATGCGGATCAAGCTCTTTCATACACACCGGACGGCTTAAAACGGCTCGA   1274

BSNT_03215___   1266 CAGAATCAAAAGGAGAGAGGCATACATCGCA--AATCCGGAGCATGAAAC   1313
                     .||||       ||||.||..||.|    ||  |..||.||.||||||||
BL01430___kam   1275 GAGAA-------GAGAAAGCTATTC----CAAGAGGCCTGATCATGAAAC   1313

BSNT_03215___   1314 ATT-AAAAGATCGGCGTGAGAAAAGGGATCAGCTCAAAGAAAAGAAATTT   1362
                     ||| ||||| .||.||.|..||..|.|||.|..|.||||||||||||||.
BL01430___kam   1314 ATTGAAAAG-CCGCCGGGCAAAGCGCGATGAATTGAAAGAAAAGAAATTC   1362

BSNT_03215___   1363 TTGGCGCAGCAGAAAAAACAGAAAG-AGACTGAATGCGGAGGGG-ATTCT   1410
                     .|.||.||||      ||.|||||| ||.| ||| ||.|||||| ||.|.
BL01430___kam   1363 CTTGCCCAGC------AAAAGAAAGAAGGC-GAA-GCTGAGGGGCATGCG   1404

BSNT_03215___   1411 TCATGA   1416
                     ..||||
BL01430___kam   1405 CAATGA   1410


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