Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03198 and BL01438

See Amino acid alignment / Visit BSNT_03198 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:52
# Commandline: needle
#    -asequence dna-align/BSNT_03198___yodJ.1.5803.seq
#    -bsequence dna-align/BL01438___yodJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03198___yodJ-BL01438___yodJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03198___yodJ-BL01438___yodJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03198___yodJ
# 2: BL01438___yodJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 876
# Identity:     605/876 (69.1%)
# Similarity:   605/876 (69.1%)
# Gaps:         108/876 (12.3%)
# Score: 2024.5
# 
#
#=======================================

BSNT_03198___      1 ATGAA---AAAGTCCGGTAAAT-------GGTT--CTCACTGGCTGCCGC     38
                     |||||   |||||.|   ||||       |.||  .|||.||        
BL01438___yod      1 ATGAACGGAAAGTAC---AAATACGTGACGATTGCTTCATTG--------     39

BSNT_03198___     39 TCTGAGTGTAACGGCAATAGTCGGAGCCGGCTGCAGCATG-TCGAACGGA     87
                      |||||||.|.|||...|..|.||..|.||.||.|.|||| .|||||  |
BL01438___yod     40 -CTGAGTGCAGCGGTCCTGCTTGGCACAGGATGTACCATGACCGAAC--A     86

BSNT_03198___     88 GATGCTCAAAAGGATACG---AAAACCACAGCAGAAA-----CAAA----    125
                     ||.|  |||||.||.|||   |||| |||||    ||     ||||    
BL01438___yod     87 GAAG--CAAAATGACACGGCTAAAA-CACAG----AATACTGCAAATGCA    129

BSNT_03198___    126 ---------GCAAACAGAACAAAAAACAGCTGACAGCA------AAAAAT    160
                              ||||| |||.|||||..||   |||||||      ||.|  
BL01438___yod    130 AGCAAGGATGCAAA-AGACCAAAAGTCA---GACAGCAGCCTGGAAGA--    173

BSNT_03198___    161 CAAACACTCAAAACAGTGAGTTTTCAT--TGGAAAGCCAGTATTTCAATG    208
                            |||..||        |||||  |.||.|||.||||.||.|||.
BL01438___yod    174 -------TCAGGAC--------TTCATACTCGAGAGCAAGTACTTTAATC    208

BSNT_03198___    209 ATATTAAAAAAGTCGATGGTCTGGAAACCATTCAAAATCCAGAAAATATA    258
                     |.||.|||.|.||.||.||.|||...||.|||||||||||.|||||.|||
BL01438___yod    209 AAATAAAAGATGTAGACGGGCTGCCGACGATTCAAAATCCGGAAAACATA    258

BSNT_03198___    259 CTCGCGCTTGTCAATAAACAATATGCACTGCCCGGAAACTATGAACCTAG    308
                     .|.||||||||.||||||.||||.||.||.|||||.|||||||.|||.||
BL01438___yod    259 ATGGCGCTTGTAAATAAAGAATACGCGCTTCCCGGCAACTATGCACCGAG    308

BSNT_03198___    309 CGATCTTGTCA-TACCTGATGTAGAGTTTTCTTTT---GAAGAAAAGATT    354
                     ||| |.||.|| |.||||||||.|.||||||||||   ||.||.|    |
BL01438___yod    309 CGA-CCTGACAGTGCCTGATGTCGCGTTTTCTTTTACCGAGGATA----T    353

BSNT_03198___    355 C-AAAAACGTTACATCAGAAAAGAAGCGGCCGA--CGCATTAAAAACAAT    401
                     | |.||.|||||.||||||||||||||.|||.|  |||.|.||.|  .||
BL01438___yod    354 CGACAAGCGTTATATCAGAAAAGAAGCCGCCAAAGCGCTTGAAGA--GAT    401

BSNT_03198___    402 GTTCGATGCTGCCAAAAAGGAAGGCTATGAACTGGCAGCTGTCTCAGGGT    451
                     ||||...||.||.||.||.||||||||||||||.|..||.||.||.||.|
BL01438___yod    402 GTTCAGCGCCGCTAAGAAAGAAGGCTATGAACTCGTTGCAGTGTCCGGCT    451

BSNT_03198___    452 ACCGTTCGTATGACAGACAGAAAGTCATTTTTGACAATGAAGTAAGCCTA    501
                     ||.|.||.|||||||||||.||||..||.|.|.||||.|||||.|||| |
BL01438___yod    452 ACAGATCCTATGACAGACAAAAAGCGATCTATAACAACGAAGTCAGCC-A    500

BSNT_03198___    502 AAAGGG-GAAAAGAAGGCAAAGGAAGCGGTCGCTTACCCCGGGGAAAGCG    550
                     |||||| |||.|.|||||.||.|||||.||.||.||.||.||..||||||
BL01438___yod    501 AAAGGGAGAAGAAAAGGCGAAAGAAGCTGTGGCATATCCGGGCCAAAGCG    550

BSNT_03198___    551 AGCACCAAACAGGCCTTGCGATGGACATTTCGAGCCGGAGCAATGGCTTT    600
                     ||||.||.|||||.|||||||||||.|||||.|||...|||||.|||||.
BL01438___yod    551 AGCATCAGACAGGACTTGCGATGGATATTTCCAGCAAAAGCAACGGCTTC    600

BSNT_03198___    601 GAGCT----AAATGAAGCGTTCGGAAGCACGGCAGACGGGAAATGGGTGC    646
                     | .||    |.|.|||   |||||.|..|||..||||||..|||||||..
BL01438___yod    601 G-CCTTATCAGAGGAA---TTCGGCAATACGAAAGACGGACAATGGGTCG    646

BSNT_03198___    647 AGGACAATGCTTATAAATATGGCTTTATCATTCGCTATCCGAAAAATAAA    696
                     ||.|.||.||.||.|||||.||||.||||||.||||||||||||||||||
BL01438___yod    647 AGAAGAACGCCTACAAATACGGCTATATCATCCGCTATCCGAAAAATAAA    696

BSNT_03198___    697 GAAGATATCACGAAATATGAATATGAGCCATGGCATCTGCGCTATGTAGG    746
                     |||||.||||||||||||.|.|||||.||.|||||.||||||||||||||
BL01438___yod    697 GAAGACATCACGAAATATAAGTATGAACCTTGGCACCTGCGCTATGTAGG    746

BSNT_03198___    747 CAAAAAAGCCGCAAAGGTCATCCAAGATAATGATTTAACGCTAGAAGAGT    796
                     .||||||||.||.||.|.|||||||||..|.||.||.|||||.|||||||
BL01438___yod    747 AAAAAAAGCGGCTAAAGCCATCCAAGAACACGACTTGACGCTTGAAGAGT    796

BSNT_03198___    797 ACTTTGAAAAAGTGAAGAAAATTTAA    822
                     |.|||.||.|.|||||.||.||.|||
BL01438___yod    797 ATTTTAAACAGGTGAAAAAGATATAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03198 and BL01438

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
