Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03157 and BL01449
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_03157___yojM.1.5803.seq
# -bsequence dna-align/BL01449___yojM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03157___yojM-BL01449___yojM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03157___yojM-BL01449___yojM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03157___yojM
# 2: BL01449___yojM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity: 385/683 (56.4%)
# Similarity: 385/683 (56.4%)
# Gaps: 181/683 (26.5%)
# Score: 1099.5
#
#
#=======================================
BSNT_03157___ 1 -----------------------------ATGCA---CCGTCTCTTGCTG 18
|||.| ||||.|.||
BL01449___yoj 1 TTGAGAACATTACATTACATATTGCTCGCATGTATGTCCGTTTGTT---- 46
BSNT_03157___ 19 TTGATGATGCTGACGGCACTGGGAGTTGCCGGATGCGGACAAAAAAAACC 68
|||.||.||| ||||..|||..||||
BL01449___yoj 47 -------------------TGGCAGCTGC---ATGCACACAGCAAAA--- 71
BSNT_03157___ 69 TCCAGACCCTCCTAACCGGG--------TGCC-----GGAAAAAAAAG-- 103
||| ||.||.| |||| ||||.|.||||
BL01449___yoj 72 ---AGA-------AATCGAGCAAAAAAATGCCGAACAGGAACATAAAGAA 111
BSNT_03157___ 104 ---TGGTTGAAACG-----TCAGCGTTTGGTCAT--CATGTCCAGCTGGT 143
| |||||||| .|||| ||| .|.||.|.||||.|
BL01449___yoj 112 ACTT--TTGAAACGATGACACAGC-------CATTAAAAGTACCGCTGAT 152
BSNT_03157___ 144 CAATCGTGAAGGGAAAGCAG-TCGGTTTTATAGAGATCAAAGAATCAGAT 192
|||.||.||.||| |.|.|| .||||||||||||..|..|.|||||.|.|
BL01449___yoj 153 CAAACGCGACGGG-ACGGAGACCGGTTTTATAGAAGTGTATGAATCTGCT 201
BSNT_03157___ 193 GATGAAGGCCTCGATATT------------CAT-ATTTCCGCAAACAGCC 229
|..||||||||.|||||| ||| || |
BL01449___yoj 202 GCAGAAGGCCTTGATATTAGAGTGAGCGCCCATGAT-------------C 238
BSNT_03157___ 230 TGCGTCCAGG--TGCTTCTCTCGGTTTTCATATTTATGAGAAAGGTTCTT 277
|||..||.|| ||||| |.||||||||||.||||.|..||...||
BL01449___yoj 239 TGCCGCCGGGCATGCTT-----GCTTTTCATATTCATGAAACGGGCGTTT 283
BSNT_03157___ 278 GTGTCAGGCCGGATTTTGAATCAGCGGGCGGTCCCTTTAATCCACTGAAC 327
|....|.|||.|||||||||...|||||.|.||..||.|||| ||||.|
BL01449___yoj 284 GCAAAAAGCCTGATTTTGAAAGTGCGGGTGCTCATTTCAATC--CTGATC 331
BSNT_03157___ 328 AAA--GAACACGGCTTCAATAATCCGATGGGGCATCATGCCGGAGATCTG 375
||| ||.||||||||.||.|||||.|..||||..||||||||.|||.||
BL01449___yoj 332 AAAAGGAGCACGGCTTTAACAATCCAAAAGGGCCGCATGCCGGTGATTTG 381
BSNT_03157___ 376 CCGAACCTTGAAGTCGGTGCTGATGGAAAGGTAGATGTCATAATGAATGC 425
|||||..||||||||||.||.||.||.||.||.||.|||||..|.|||||
BL01449___yoj 382 CCGAATATTGAAGTCGGAGCAGACGGCAAAGTCGACGTCATCGTCAATGC 431
BSNT_03157___ 426 GCCTGACACTTCAC------TGAAAAAAGGAAGTAAACTAAATATTCTCG 469
||| |.|| .|||| |.|.|||||.|.|| |.|.|.|.||.|
BL01449___yoj 432 GCC-GGCA-GTCACCCTCGATCAGAAAAGCAGGT----TCAGTCTGCTGG 475
BSNT_03157___ 470 ACGAGGACGGAAGTGCATTTATTATTCATGAACA--AGCG--GACGATTA 515
|..|.|||||||||||.|||||||||||.||.|| || | |||||||
BL01449___yoj 476 ATCATGACGGAAGTGCTTTTATTATTCACGAGCATCAG-GATGACGATT- 523
BSNT_03157___ 516 TCTGACAAACCCAAGCGGCAATTCCGGTGCGCGTATTGTCTGCGGAGCCC 565
|||||||.|||...||.||.|||||.||.||.||.||.||||||||.|
BL01449___yoj 524 --TGACAAATCCATCAGGTAACTCCGGAGCCCGGATGGTTTGCGGAGCGC 571
BSNT_03157___ 566 TTTTGGGAAATAACGAGAAGCAGTAA------- 591
|.||||..|||.|.||
BL01449___yoj 572 ----------TGACGAACAGCGGAAAAAAGTGA 594
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