Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02200 and BL01469

See Amino acid alignment / Visit BSNT_02200 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_02200___ykkB.1.5803.seq
#    -bsequence dna-align/BL01469___ykkB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02200___ykkB-BL01469___ykkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02200___ykkB-BL01469___ykkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02200___ykkB
# 2: BL01469___ykkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity:     325/593 (54.8%)
# Similarity:   325/593 (54.8%)
# Gaps:         160/593 (27.0%)
# Score: 765.5
# 
#
#=======================================

BSNT_02200___      1 ATGAACGCTAAA-----ACGAAGCTTGTGACCGATCGAATTCGTTTGCGC     45
                     |||||.|  |.|     |.|||      |||.||.||..||..|||||  
BL01469___ykk      1 ATGAAAG--ACATGATCATGAA------GACAGACCGGCTTATTTTGC--     40

BSNT_02200___     46 TGTATGGAAGAT----CGGGATCAAGCC----ACTTTGTTTGGGCTGCT-     86
                          |.||.||    ||.|||.|.|||    ||          ||||| 
BL01469___ykk     41 -----GAAAAATGAGGCGCGATGACGCCGAAAAC----------CTGCTC     75

BSNT_02200___     87 ------TTTTAATGATCCTGAC------GTCATGACATATTATTC--CGG    122
                           ||||       |||||      |..|||..|||||||.|  || 
BL01469___ykk     76 GAAATCTTTT-------CTGACCCGATAGCAATGGAATATTATCCATCG-    117

BSNT_02200___    123 TTTA-AAAGATAAGAGGCAAACCCGCGAGTGGGTCAATTGGAACCAACGA    171
                        | |||||    |.|.|||.|.|..|.||   ||| ||||.|.|.||.
BL01469___ykk    118 ---ACAAAGA----ATGAAAAACAGACATTG---CAA-TGGATCGACCGG    156

BSNT_02200___    172 A------------ATGAAAAAGGGTACGG---CGTTAGTCTGTGGATCGC    206
                     |            ||||||||   .||||   ||   ||||||||.|.||
BL01469___ykk    157 ACGCTTGAAAACTATGAAAAA---CACGGAACCG---GTCTGTGGGTTGC    200

BSNT_02200___    207 CGAAGATAAGCGGACAGGGGAGTTTTTGGGGCAATGCGGCACTGTTCCCC    256
                     ||||.||||.|..||.||.||.|||||.||.||||||||||..||.||.|
BL01469___ykk    201 CGAACATAAACAAACGGGCGAATTTTTAGGCCAATGCGGCATCGTGCCAC    250

BSNT_02200___    257 AGCAGATCGAA-AATCAAACCGTAATGGAAATTGGCTATATGTTTGCCCG    305
                     ||.|..||||| .|||.|| ||.|||||||||.||||||.|||||...||
BL01469___ykk    251 AGGAAGTCGAAGGATCGAA-CGAAATGGAAATCGGCTATTTGTTTAAACG    299

BSNT_02200___    306 CCGCCACTGGGGGAACGGCTATGCGCAA--GAAGCGGC-TCGGGCCTGTC    352
                     ..||..||||...|||||||||  ||||  |||||.|| || .||.||..
BL01469___ykk    300 GAGCGTCTGGAAAAACGGCTAT--GCAACCGAAGCAGCATC-AGCATGCA    346

BSNT_02200___    353 TGGACTATGGCTTTAACGAGCGGCAGTTCGGC-----AAAATGGCGGCTT    397
                     ...|.|||||.|||     |.|.||.|||..|     |||||.|...|||
BL01469___ykk    347 AACAATATGGATTT-----GAGTCATTTCATCTGAAAAAAATCGTATCTT    391

BSNT_02200___    398 TGATTGATCCGGGTAACAAA-----GCGTCCATACGGGTAGCGGAGAAAA    442
                     |...||||.||     ||||     .||||||.|...|||||.||...||
BL01469___ykk    392 TACCTGATGCG-----CAAAATCTGCCGTCCAGAAAAGTAGCCGAACGAA    436

BSNT_02200___    443 TCGGTATG-CATCACAGCGAAACGACCAGA---AAATGG----AATAAAC    484
                     ||||.||| |.|.|    ||||..||.|.|   ||||||    ||.||  
BL01469___ykk    437 TCGGCATGACTTTA----GAAAAAACAATACATAAATGGGGAAAAGAA--    480

BSNT_02200___    485 CGATCGCGGTATATGAAAGAAAATCTTACAATTGA--------    519
                       ||.||.||||||         ||     |.||.        
BL01469___ykk    481 --ATTGCCGTATAT---------TC-----AGTGTATCGCTAA    507


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.