Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03609 and BL01518

See Amino acid alignment / Visit BSNT_03609 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_03609___spo0A.1.5803.seq
#    -bsequence dna-align/BL01518___spo0A.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03609___spo0A-BL01518___spo0A.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03609___spo0A-BL01518___spo0A.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03609___spo0A
# 2: BL01518___spo0A
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity:     646/808 (80.0%)
# Similarity:   646/808 (80.0%)
# Gaps:          11/808 ( 1.4%)
# Score: 2573.0
# 
#
#=======================================

BSNT_03609___      1 GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAG     50
                     |||||||||||||||||.|||||||||||||||||..|.|||||.||..|
BL01518___spo      1 GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGG     50

BSNT_03609___     51 CCTGTTAAGTGAATATATAGAAGGACAGGAAGACATGGAAGTGATCGGCG    100
                     |||.|||||.||||||||.||.||||||...||||||||||||.|.||.|
BL01518___spo     51 CCTATTAAGCGAATATATCGAGGGACAGAGCGACATGGAAGTGCTTGGTG    100

BSNT_03609___    101 TTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCC    150
                     |.||.||.|||||||||||||||||.||..||||||||||.||.||.|||
BL01518___spo    101 TCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCC    150

BSNT_03609___    151 GATGTGCTCGTATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGT    200
                     ||.|||||.||..|.|||||.||.|||||.|||.|.||||||.|.||.||
BL01518___spo    151 GACGTGCTTGTGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGT    200

BSNT_03609___    201 TTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCGAATGTCATTA    250
                     |.|.||.||||||||||||||..|.||.|||||.||||||||||||||.|
BL01518___spo    201 TCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCGAATGTCATCA    250

BSNT_03609___    251 TGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTA    300
                     |||||||.||.||.||.||||||||.||.||.|||||.||.||.||||||
BL01518___spo    251 TGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTA    300

BSNT_03609___    301 GGCGCGTCCTACTTTATTCTCAAACCGTTTGATATGGAAAACCTTGTCGG    350
                     ||||||||.||.||||||.|.||.||.|||||.|||||.||..|.|||||
BL01518___spo    301 GGCGCGTCGTATTTTATTTTGAAGCCTTTTGACATGGAGAATTTAGTCGG    350

BSNT_03609___    351 TCATATCCGCCAGGTCAGCGGAAATGCCAG----CAGTGTGACGCATCGT    396
                     .|||||||||||||||||||||||   |.|    ||.| ||||.||.|||
BL01518___spo    351 ACATATCCGCCAGGTCAGCGGAAA---CGGATCTCAAT-TGACACACCGT    396

BSNT_03609___    397 GCGCCATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAA    446
                     ||.||.||.||.|||||||||.|..|.||  ||.| |||||||||.|...
BL01518___spo    397 GCCCCGTCCTCTCAAAGCAGTGTGCTTCG--GCCG-CAGCCTGAATCGCC    443

BSNT_03609___    447 GAAGAAAAATCTCGACGCGAGCATCACAAGCATTATCCATGAAATCGGCG    496
                     |||||||||.||.|||||.||||||||.|.|||.|||||.||||||||||
BL01518___spo    444 GAAGAAAAACCTGGACGCCAGCATCACGACCATCATCCACGAAATCGGCG    493

BSNT_03609___    497 TCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATG    546
                     |.||.||.|||||||||||||||.|.||..|..|.|||||.|||||.|||
BL01518___spo    494 TACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATG    543

BSNT_03609___    547 GTATACAATGACATCGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCC    596
                     |||||.||.|||||||||.||||||||||||||||||||||.||.|||||
BL01518___spo    544 GTATATAACGACATCGAACTGCTCGGCAGCATTACAAAAGTGCTTTATCC    593

BSNT_03609___    597 GGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAAGAGCGA    646
                     |||.||||||||||||||.|||||.||.||||||||.||.|||.|.||||
BL01518___spo    594 GGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGGCGA    643

BSNT_03609___    647 TCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATT    696
                     |.||.||.||.||.|||||.||||||||||||||.|||||.||.||.|||
BL01518___spo    644 TTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATT    693

BSNT_03609___    697 TCCTCGTTGTTTGGTTATACTGTCAGCATGACAAAAGCTAAACCTACCAA    746
                     ||.||..|.||.||.||.||.|||||||||.|||||||.||.||.|||||
BL01518___spo    694 TCGTCACTTTTCGGCTACACAGTCAGCATGTCAAAAGCAAAGCCGACCAA    743

BSNT_03609___    747 CAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGG    796
                     .|||||.|||||.||.|||||.||.||.||||||||..|.||||||||||
BL01518___spo    744 TAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGG    793

BSNT_03609___    797 CTTCTTAA    804
                     ||||||||
BL01518___spo    794 CTTCTTAA    801


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