Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03638 and BL01533
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03638___spoIIIAH.1.5803.seq
# -bsequence dna-align/BL01533___spoIIIAH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03638___spoIIIAH-BL01533___spoIIIAH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03638___spoIIIAH-BL01533___spoIIIAH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03638___spoIIIAH
# 2: BL01533___spoIIIAH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 692
# Identity: 450/692 (65.0%)
# Similarity: 450/692 (65.0%)
# Gaps: 88/692 (12.7%)
# Score: 1335.0
#
#
#=======================================
BSNT_03638___ 1 ---ATGCTTAAAAAACAAACCGTTTGGCTATTAACAATGCTCAGTCTTGT 47
|||||.|||||||||||.||||||||.|||||.|||.|.|||||.||
BL01533___spo 1 ATGATGCTGAAAAAACAAACGGTTTGGCTTTTAACCATGTTAAGTCTCGT 50
BSNT_03638___ 48 CGTGGTGTTAAGCGTCTACTATATCATGTCGCCGGAAAGCAAAAACGCCG 97
|||.||..|.||.||||||||.||.||||||||.|||.|..||||.|.||
BL01533___spo 51 CGTTGTACTGAGTGTCTACTACATTATGTCGCCCGAAGGAGAAAATGTCG 100
BSNT_03638___ 98 TGCA-----GATGCAAAGTGAAAAAAGCGCGTCTGACAGCGGAGAGGTCG 142
| || ||||..||| |||.||...||..||||.|..|.|
BL01533___spo 101 T-CACGGTTGATGACAAG-GAACAAGTTGCCGCTGAAAAAGAA------- 141
BSNT_03638___ 143 CAAC---TGAAA-AAGCGCCTGCCAAGCAAGACACGAAGGAAAAAAGCGG 188
.||| ||||| |||.|||||||||| ||.||.|||.| .|.
BL01533___spo 142 AAACCGATGAAAGAAGAGCCTGCCAAG--------GATGGCAAAGA-TGA 182
BSNT_03638___ 189 TACAGAAACTGAAAAAGGAAAAGAAGATGGAAC-AAAGGGAACGAAAGAT 237
|||.|...|||..||||..|| ||| ||||||||.||.|
BL01533___spo 183 TACCGCGCCTGCTAAAGACAA---------AACTAAAGGGAAAGATA--- 220
BSNT_03638___ 238 TCATCAGCAGACAAGGAAACATCCGCTGAAGCCAGTG---AAAAAGGAAC 284
||..|||.||.|||||.|| .||.|||| |.||.|||..
BL01533___spo 221 ----CAAAAGATAAAGAAACGTC------TGCGAGTGAGCAGAACGGAGA 260
BSNT_03638___ 285 TGTTGTTAC---GGAAACA---GCCGATGATGATCTGTTTACAACGTACC 328
.|||||.|| ||||.|| |..|||||.|||.|.||.|||||.||||
BL01533___spo 261 GGTTGTCACAGAGGAATCATCGGGTGATGAAGATTTATTCACAACATACC 310
BSNT_03638___ 329 GTCTTGATTTAGAAGATGCCA--GAAGCAAAGAAAGAGAAG----AGCTG 372
|..|.||..|.||.||| || |.||||..||.||.||.| |.|.|
BL01533___spo 311 GCATGGAAATGGACGAT--CAGCGCAGCAGGGAGAGGGAGGAATTAACCG 358
BSNT_03638___ 373 AATGCCATTGTGTCAAGCGATGATGCAACAGCCAAGGAGAAAAGCGAAGC 422
|| ||.||...|||||||.|.||.||.||.||.||.|||||||||||
BL01533___spo 359 AA----ATCGTCAGAAGCGATAAAGCGACGGCAAAAGAAAAAAGCGAAGC 404
BSNT_03638___ 423 ATACGATAAAATGACGGCTCTCAGTGAAGTGGAAGGAACAGAAAA-ACAG 471
.|||||.||.|||||.|..|||||.||||..||||||||.||||| || .
BL01533___spo 405 TTACGACAAGATGACAGAGCTCAGCGAAGCTGAAGGAACGGAAAAGAC-C 453
BSNT_03638___ 472 CTTGAAACGCTGATTAAAACACAAGGTTACGAGGATGCGCTT-GTTAATG 520
||||||||.||.||.||||||.||||.||..|.||.|| ||| ||.||.|
BL01533___spo 454 CTTGAAACCCTCATCAAAACAAAAGGCTATAAAGACGC-CTTGGTCAACG 502
BSNT_03638___ 521 CTGAAGGAGATAAAATCAATATTACAGTCAAATCAGACAAA----CACTC 566
|.||.||.||||||.||||||||||.||.| ||.|.|| |||||
BL01533___spo 503 CCGACGGCGATAAAGTCAATATTACGGTGA----AGGCGAAGGAGCACTC 548
BSNT_03638___ 567 CAAATCGAAGGCGACAGCCATTATAGACCTTGTGGCAAAAGAAATCAAAA 616
.|||.|....||.||.|..||.||.|||.|.||.|||||||||.|.||||
BL01533___spo 549 GAAAGCCGCTGCCACCGATATCATCGACATCGTCGCAAAAGAAGTGAAAA 598
BSNT_03638___ 617 CAATGAAA-GATGTCGCTGTCACATTTGAACCATCCAAGTAA 657
|.|.||| |||||.|||||.||.||.||.|||.|..|.|||
BL01533___spo 599 -ACTTAAACGATGTGGCTGTAACGTTCGAGCCAGCAGATTAA 639
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