Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03648 and BL01540

See Amino acid alignment / Visit BSNT_03648 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03648___spoIIIAA.1.5803.seq
#    -bsequence dna-align/BL01540___spoIIIAA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03648___spoIIIAA-BL01540___spoIIIAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03648___spoIIIAA-BL01540___spoIIIAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03648___spoIIIAA
# 2: BL01540___spoIIIAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity:     628/1016 (61.8%)
# Similarity:   628/1016 (61.8%)
# Gaps:         184/1016 (18.1%)
# Score: 1833.0
# 
#
#=======================================

BSNT_03648___      1 TTGAATGAAATCGCTGAGGTTCTCCCTGATTCCATGAAAAACGCCCT---     47
                     |||.|..|.|||.|.|||.|||||||.|||.|.||.|||..|||.||   
BL01540___spo      1 TTGCACCACATCACAGAGATTCTCCCCGATACGATCAAACGCGCGCTCAG     50

BSNT_03648___     48 --TTCTGAAATACCGGAACAACAATGGCTGGAAATCGA------AGAAGT     89
                       .|||       .||  |.||.||     ||||||||      ||||| 
BL01540___spo     51 CGGTCT-------TGG--CGACCAT-----GAAATCGATCAGATAGAAG-     85

BSNT_03648___     90 CAGAATTCGGAT-----CAA-----CCGCCCTGTTGAATTGATTCGA--A    127
                       .|||||||.|     |||     ||||    |.|||.||.|  ||  |
BL01540___spo     86 --AAATTCGGGTTCGGACAAGTCGTCCGC----TGGAACTGGT--GAACA    127

BSNT_03648___    128 GAGGACAACC-TGTTTATTTGTCC--TATGCGGGCACGGCCGAGGA---T    171
                     .||||.|.|| .|   .|||.|||  ||||.||..|||.|.||.||   .
BL01540___spo    128 AAGGAAAGCCGCG---CTTTCTCCCTTATGTGGCGACGCCTGAAGACTCG    174

BSNT_03648___    172 GCCCATCT--------GATCCTGAGCCGGCTCAGCAACTATAGTATGTAT    213
                     ||.|.|||        |||           |..|.||.||.||.||||||
BL01540___spo    175 GCGCTTCTTTTAAACAGAT-----------TGGGAAATTACAGCATGTAT    213

BSNT_03648___    214 ACACTTGAAGAAGAGCTGAAGAAAGGGTATGTCACGATCAGAGGCGGCCA    263
                     |||||.|||||.||..||||.|||||.||||||||||||||||||||.||
BL01540___spo    214 ACACTGGAAGAGGAATTGAAAAAAGGATATGTCACGATCAGAGGCGGACA    263

BSNT_03648___    264 CAGAGTCGGACTGGCGGGCAGAGTCATTACG--GAAAACGGAGGTGTGAA    311
                     |.|.||.||.||.||.|||.|.||  |..||  ||||||||.|..||.||
BL01540___spo    264 CCGCGTGGGGCTTGCCGGCCGGGT--TGTCGTCGAAAACGGGGCCGTCAA    311

BSNT_03648___    312 AGGCCTCCGTGACATCGCATCTTTTAATATACGAATTGCCCGGCAAAAGC    361
                     |||..||.|.||.||..||||.||||||||.||.||||||....||||..
BL01540___spo    312 AGGAATCAGAGAAATATCATCATTTAATATTCGCATTGCCAAAGAAAAAA    361

BSNT_03648___    362 TGGGGATTGCGGAGCCG-CTG-CTTCCATACTTATATCAAAACAGCTGGC    409
                     |.||.|||.|..|.||| .|| |..||||  ||||.|||||||...||||
BL01540___spo    362 TCGGCATTTCCAAACCGTATGTCCCCCAT--TTATTTCAAAACTCGTGGC    409

BSNT_03648___    410 TGAATACGCTGATTATCGGACCGCCCCAAACCGGCAAAACAACACTTCTC    459
                     ||||.||||||||||||||.|||||.||||||||.|||||||||||.|||
BL01540___spo    410 TGAACACGCTGATTATCGGTCCGCCGCAAACCGGAAAAACAACACTGCTC    459

BSNT_03648___    460 CGGGACCTTGCGAGGCT------CTCAAGCACCGGCAA----------AA    493
                     .|.|||||.||.|||||      .||..|.|.||||||          ||
BL01540___spo    460 AGAGACCTCGCCAGGCTGATCAGTTCGGGAAGCGGCAACGCCCCTGCCAA    509

BSNT_03648___    494 AAAACATGCTGCCCGTAAAGACAGGGATCGTCGATGAACGGTCAGAGATT    543
                     ||||          ||      .|||||.||.||.|||.||||.||.||.
BL01540___spo    510 AAAA----------GT------GGGGATTGTTGACGAAAGGTCTGAAATC    543

BSNT_03648___    544 GCCGGATGTCTTCGCGGTATTCCGCAGCATCAATTTGG-TCAGAGA----    588
                     ||.||.|||.|...|||.||.|||||..|||     || ||.|.||    
BL01540___spo    544 GCAGGCTGTGTAAACGGCATACCGCAATATC-----GGCTCGGCGACCGG    588

BSNT_03648___    589 --ATTGACGTGTTAGACGCCTGTCCAAAAGCTGAAGGGCTGATGATGATG    636
                       |  |||.|..|.|||||||||||||||||.||||||||||||||||||
BL01540___spo    589 GCA--GACATCCTTGACGCCTGTCCAAAAGCGGAAGGGCTGATGATGATG    636

BSNT_03648___    637 ATTCGATCCATGAGCCCTGAGGTGATGATTGTCGATGAAATCGGGCGTAT    686
                     ||..||||.|||||.||.|||||.|||||.|.||||||.||||||.|.||
BL01540___spo    637 ATCAGATCGATGAGTCCGGAGGTAATGATCGCCGATGAGATCGGGAGAAT    686

BSNT_03648___    687 GGAAGATACAGATGCACTTCTGGAGGCGCTGCATGCCGGTGTTTCAGTAA    736
                     ||||||..||||.||.||..||||.|||.|.||.||.||.||..|.||.|
BL01540___spo    687 GGAAGACGCAGAAGCGCTCTTGGAAGCGGTCCACGCGGGGGTGACTGTCA    736

BSNT_03648___    737 TCGTATCGGCGCATGGCTGGAGTATAT-CCGACCTGATGAAGCGGCCTTC    785
                     ||||.|||||.||.||||..| .|||| |.||.||....|.|||.||.||
BL01540___spo    737 TCGTTTCGGCTCACGGCTACA-CATATGCAGATCTCGCCAGGCGTCCATC    785

BSNT_03648___    786 ATTGAA---GCGTTTGTGGGAAGAAAGAGC-------CTTTGACCGCTAT    825
                     ||||||   ||.|          .||||||       .|||||  ||.|.
BL01540___spo    786 ATTGAAAATGCTT----------CAAGAGCACCGGGTTTTTGA--GCGAA    823

BSNT_03648___    826 T--TGGAATTATCAAGAGCAAAAGGGCCGGGCACAGTGAGCCAAAT-TTA    872
                     |  |||||.|.||.|||...||.||.||.||||...||||||..|| .||
BL01540___spo    824 TCGTGGAACTTTCCAGAAAGAACGGTCCCGGCAGCCTGAGCCGCATCCTA    873

BSNT_03648___    873 TGACAAAG---ACGGAAATGTGCTGTCTAGGACGACGGGCGTGAAAA---    916
                         ||.|   |||||.|...|||           ||||...|.|||   
BL01540___spo    874 ----AATGGGAACGGAGAGCCGCT-----------CGGGGCAGCAAAGAG    908

BSNT_03648___    917 --------CATGCTGA    924
                             ||||||||
BL01540___spo    909 GATGTTATCATGCTGA    924


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