Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03653 and BL01545
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_03653___yqhR.1.5803.seq
# -bsequence dna-align/BL01545___yqhR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03653___yqhR-BL01545___yqhR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03653___yqhR-BL01545___yqhR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03653___yqhR
# 2: BL01545___yqhR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity: 377/579 (65.1%)
# Similarity: 377/579 (65.1%)
# Gaps: 84/579 (14.5%)
# Score: 1137.0
#
#
#=======================================
BSNT_03653___ 1 -------ATGATGACTAGCGAAAAAGATACAGAACAAAATGA--AGAATT 41
||||.|||.|.| |||||.|..|.|||.|...||| |||||
BL01545___yqh 1 ATGGGTAATGAAGACAATC-AAAAACAGCCGGAAGAGCTTGAGCAGAAT- 48
BSNT_03653___ 42 GAATGAGAAGC---AAAAGCCGCCTG--TTTCAATGGCCGGCAGGGTGGC 86
|||| |||..||| .|| ||||| ||||.||||||
BL01545___yqh 49 -------AAGCGTGAAACCCCG-ATGACTTTCA----CCGGAAGGGTG-- 84
BSNT_03653___ 87 GGCA--ACAGGTTTTTGCGGAGGCGTACTTTGGAGT---TTCGTTGCTTA 131
..|| ||.||.|||..|||.||.||.||.|||||| .|||.|| |
BL01545___yqh 85 ATCATGACTGGCTTTGTCGGCGGAGTGCTCTGGAGTGCACTCGGTG---A 131
BSNT_03653___ 132 TATCGCATATTTGTTTCATTTTTCCGAAATCAGCCCGAATATGATATTGC 181
..|.||.||..|.|||.|.||.|||||..|||...||||.|||||..|.|
BL01545___yqh 132 GCTGGCGTACCTTTTTAAGTTCTCCGAGGTCAATGCGAACATGATTCTCC 181
BSNT_03653___ 182 AGCCGTTTGTACTCGGAGAGTGGAAAAAACATGGG----CTGGGAACGGT 227
||||.|||||..||||.||.|||||||| .|| ||.||||||.|
BL01545___yqh 182 AGCCTTTTGTCATCGGCGACTGGAAAAA----CGGATTTCTCGGAACGTT 227
BSNT_03653___ 228 AATCAGCATCATTTTGATTGGAGTAATTTCAATTGGCGCAGCATTTCTTT 277
.||||||||..|.|||||.|||||.|||||.||.||.||.||.||.||||
BL01545___yqh 228 TATCAGCATACTCTTGATCGGAGTGATTTCCATCGGGGCTGCCTTGCTTT 277
BSNT_03653___ 278 ATTTTCTTCTA-------TTGAAAC-GTTTAAAAACAATGTGGCCGGGTA 319
| ||| |||||.| |.|.|.|..| ||||||.|.||.|
BL01545___yqh 278 A-------CTACGGCACTTTGAAGCAGGTCAGAGGC-ATGTGGGCAGGCA 319
BSNT_03653___ 320 TTTTATACGGCTTGGTGC---TTT---GGCTGCTCGTGTTTTTTGTTTTT 363
||.|.|| |||.|| ||| ||||| |||||||||...|.||.
BL01545___yqh 320 TTGTCTA-----TGGAGCCGTTTTGTGGGCTG-TCGTGTTTTACCTGTTC 363
BSNT_03653___ 364 AATCCGATTTTTCCAGATGTGCGCACGGTGACCGAACTGACATCA----G 409
||||||||.|||||.|||||.|..||.|||.|.|||.|.| | |
BL01545___yqh 364 AATCCGATGTTTCCCGATGTTCAGACAGTGGCTGAATTAA----AGAGGG 409
BSNT_03653___ 410 ATACAATTATTACGACCATTTGCATTTATTTGCTTTACGGGCTGTTTGTC 459
|.||.|||.|.|||||..|.|||||||||.||||||||||..|.||.|||
BL01545___yqh 410 AAACGATTGTGACGACGCTGTGCATTTATCTGCTTTACGGTTTATTCGTC 459
BSNT_03653___ 460 GGGTATTCCATTTCATTTGAATACAATGAGCTGAATTCGGAAAAGCTTGC 509
||.|||||||||||.|||||||||||||||||.|||||.|||||.||..|
BL01545___yqh 460 GGCTATTCCATTTCGTTTGAATACAATGAGCTCAATTCTGAAAAACTGAC 509
BSNT_03653___ 510 ACGTGCGCTGGGA-ATGCATAGAGAATAG 537
.||.||.||.||| |..|| |||||||||
BL01545___yqh 510 GCGCGCCCTTGGAGAAACA-AGAGAATAG 537
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