Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00530 and BL01556

See Amino acid alignment / Visit BSNT_00530 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00530___opuAC.1.5803.seq
#    -bsequence dna-align/BL01556___opuAC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00530___opuAC-BL01556___opuAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00530___opuAC-BL01556___opuAC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00530___opuAC
# 2: BL01556___opuAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 916
# Identity:     629/916 (68.7%)
# Similarity:   629/916 (68.7%)
# Gaps:          65/916 ( 7.1%)
# Score: 2006.0
# 
#
#=======================================

BSNT_00530___      1 ATGCTTAAAAAAATCATC-GGCATCGGCGTTTCCGCCATGCTGGCGCTCT     49
                     |||...|||||.|| |.| ||.||||||..|.|.||      ||..|||.
BL01556___opu      1 ATGTGGAAAAAGAT-AGCGGGAATCGGCACTGCAGC------GGTACTCA     43

BSNT_00530___     50 CA------CTTGCGGCTTGCGG-TTCAG--AAAACGAAAAAAATGCATCC     90
                     ||      ||.||.||.||||| ..|||  |.||..|..|||||||.||.
BL01556___opu     44 CATTGGGTCTGGCTGCCTGCGGAAGCAGCAATAATAATGAAAATGCGTCA     93

BSNT_00530___     91 GCAGCAGAACAGGTGAATAAGACCATCATCGGGATTGACCCCGGTTCAGG    140
                     |.||..||.||.||.|||.|.|..||.|.|||.|||||.||.||..|.||
BL01556___opu     94 GTAGGCGATCAAGTCAATTATAAAATTACCGGCATTGATCCTGGAGCGGG    143

BSNT_00530___    141 GATTATG--TCCCTGACTGACAAAGCGATGAAGGATTATGACCTGAATGA    188
                     .||||||  |.|  |||.|||.|.|||.|.|||||.||.||.||.|...|
BL01556___opu    144 CATTATGAATGC--GACGGACCAGGCGCTCAAGGACTACGATCTCAGCAA    191

BSNT_00530___    189 CTGGACATTGATTTCTGCGTCAAGTGCTGCGATGACCGCTACGCTT---A    235
                     .|||||..|.|..||.|..|||||..|.||.|||||.||  |||.|   |
BL01556___opu    192 GTGGACTGTAACGTCAGGATCAAGCTCAGCAATGACAGC--CGCATTGAA    239

BSNT_00530___    236 AAAAGTCATACGACCGTAAGAAA---CCGATTATCATTACAGGATGGACA    282
                     ||||| |.||.|||   ||.|||   |||||.||||||||.||.|||||.
BL01556___opu    240 AAAAG-CTTATGAC---AAAAAAGATCCGATCATCATTACGGGCTGGACG    285

BSNT_00530___    283 CCGCACTGGATGTTCTCTAGATATAAGCTGAAATATCTCGATGATCCGAA    332
                     |||||.||||||||..|.|.|||..|.|||||||||.|..|.|||||.||
BL01556___opu    286 CCGCATTGGATGTTTGCAAAATACGATCTGAAATATTTAAAAGATCCTAA    335

BSNT_00530___    333 ACAATCTTATGGCAGCGCAGAGGAAATCCATACGATCACACGCAAAGGCT    382
                     |...||.||.|||...||.||.|||||||||||..|.||.||||||||.|
BL01556___opu    336 AGGTTCCTACGGCGATGCCGAAGAAATCCATACTGTTACGCGCAAAGGAT    385

BSNT_00530___    383 TCAGCAAAGAACAGCCGAATGCCGCA---AAGCTTCTGAGCCAGTTTAAA    429
                     |||...|.||.||.|||   |.||||   |||||.||.|||||.||.|..
BL01556___opu    386 TCAAGGACGACCATCCG---GGCGCAAACAAGCTGCTCAGCCAATTCAGC    432

BSNT_00530___    430 TGGACGCAAGACGAAATGGGCGAAATCATGATCAAGGTGGAGGAAGGCGA    479
                     |||||..|.||.||.|||||.|||.|||||.|....||..||||||||.|
BL01556___opu    433 TGGACAGAGGATGATATGGGAGAAGTCATGCTTGCCGTTCAGGAAGGCAA    482

BSNT_00530___    480 GAAACCTGCCAAAGTTGCTGCCGAGTACGTCAATAAACA-CAAGGATC--    526
                     .|||||.|...|||.|||.||.||.|.|||.||.||||| ||| ||||  
BL01556___opu    483 AAAACCGGAAGAAGCTGCAGCAGACTTCGTGAAAAAACATCAA-GATCTA    531

BSNT_00530___    527 ----AGATTGCCGAATGGACAAAAGGCGTTCAAAAGGTAAAG-----GGA    567
                         |||      ||||||||||||||||     .|.|||||     ||.
BL01556___opu    532 GTTAAGA------AATGGACAAAAGGCGT-----CGATAAAGCGGACGGT    570

BSNT_00530___    568 GACAAAATCAACCTTGCCTATGTGGCGTGGGACAGTGAGATTGCAAGTAC    617
                     ||.|||||.||.||.|.|||||||||.||||||||.||.|||||.||.||
BL01556___opu    571 GAAAAAATTAAGCTCGGCTATGTGGCATGGGACAGCGAAATTGCGAGCAC    620

BSNT_00530___    618 AAACGTCATAGGCAAAG-TCTTAGAAGACTTGGGCTATGAGGTAACACTT    666
                     .||.|||||.|..|||| |||| ||||||||.||.||..|.||.||.||.
BL01556___opu    621 GAATGTCATCGCAAAAGTTCTT-GAAGACTTAGGATACAACGTTACGCTC    669

BSNT_00530___    667 ACTCAGGTAGAGGCTGGGCCGATGTGGACTGCAATTGCGACGGGAAGTGC    716
                     |..||.|||||.||.||.|||||||||||||..|||||.|..|||||.|.
BL01556___opu    670 AGCCAAGTAGAAGCAGGCCCGATGTGGACTGGCATTGCAAATGGAAGCGT    719

BSNT_00530___    717 GGATGCATCCCTTTCCGCATGGCTGCCGAATACCCATAAAGCATACGCCG    766
                     .|||||.||.|||.|.||||||||||||.|.||.||||||.||||.||.|
BL01556___opu    720 CGATGCTTCACTTGCTGCATGGCTGCCGCAAACGCATAAAACATATGCTG    769

BSNT_00530___    767 CTAAATATAAAGGCAAATATGATGATATTGGCACAAGTATGACGGGTGTG    816
                     ..|||||.|||||||||||.||.|||||.||.||.||.|||||.||.||.
BL01556___opu    770 AAAAATACAAAGGCAAATACGAAGATATCGGTACTAGCATGACAGGCGTA    819

BSNT_00530___    817 AAGATGGGGCTTGTTGTTCCTCAATATATGAAAAATGTCAACTCAATTGA    866
                     ||.||.||.|||||.|||||...||||||||||.|||||||.|||||.||
BL01556___opu    820 AAAATTGGCCTTGTCGTTCCGACATATATGAAAGATGTCAATTCAATCGA    869

BSNT_00530___    867 AGATTTGAAGAAGTAA    882
                     |||.|||||.||.|||
BL01556___opu    870 AGACTTGAAAAAATAA    885


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00530 and BL01556

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
