Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03664 and BL01561

See Amino acid alignment / Visit BSNT_03664 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03664___gcvPA.1.5803.seq
#    -bsequence dna-align/BL01561___gcvPA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03664___gcvPA-BL01561___gcvPA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03664___gcvPA-BL01561___gcvPA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03664___gcvPA
# 2: BL01561___gcvPA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1376
# Identity:    1036/1376 (75.3%)
# Similarity:  1036/1376 (75.3%)
# Gaps:          58/1376 ( 4.2%)
# Score: 3861.5
# 
#
#=======================================

BSNT_03664___      1 ATGAAGCACCGTTATTTGCCCGCAACAGAAAAGGATAAACAGGAGATGCT     50
                     ||||||||||||||..||||.||.|||||..||||||||.||||||||||
BL01561___gcv      1 ATGAAGCACCGTTACCTGCCAGCTACAGATCAGGATAAAAAGGAGATGCT     50

BSNT_03664___     51 TGCTACTATCGGCGT-AAGCAGCATCGATGATTTATTTGCTGATATACCG     99
                     ||...|.||.||.|| .|| ||.|||||.||..||||..|.||||||||.
BL01561___gcv     51 TGAGGCAATTGGAGTCGAG-AGAATCGACGAGCTATTCTCCGATATACCC     99

BSNT_03664___    100 GAAAACGTCAAATATAAAAAAGAGTATCAAATCAAAAAAGCGAAATCAGA    149
                     ||||.|||||.||.||||...||.||.|||||.|||||.||.||.||.||
BL01561___gcv    100 GAAAGCGTCAGATTTAAAGGGGAATACCAAATTAAAAAGGCAAAGTCCGA    149

BSNT_03664___    150 AACAGAATTAACAAGAGAACTGACAAAGCTGGCCTCTAAAAATTGTGATA    199
                     .||.||..|.||||.|||.|||||.||.||.||..||||||||...||||
BL01561___gcv    150 GACGGAGCTTACAAAAGAGCTGACGAAACTCGCGGCTAAAAATAAAGATA    199

BSNT_03664___    200 CCGT-ACAATACGCTTCTTTCTTAGGAGCGGGTGTATATGACCACTATCA    248
                     |.|| || .|||||.|||||.||.||||||||.|||||.||.||.||.||
BL01561___gcv    200 CAGTGAC-GTACGCCTCTTTTTTGGGAGCGGGCGTATACGATCATTACCA    248

BSNT_03664___    249 GCCTGTCATTGTGGATCATGTCATTTCGCGCTCTGAGTTTTATACCGCAT    298
                     |||.|||||.||||||||.||.||||||||.||.||.|||||.||.||.|
BL01561___gcv    249 GCCCGTCATCGTGGATCACGTGATTTCGCGGTCGGAATTTTACACGGCCT    298

BSNT_03664___    299 ATACGCCTTATCAGCCAGAGATTTCACAAGGAGAGCTCCAGGCTATTTTT    348
                     |.||.||.|||||||||||.|||||.|||||.|||||||||||.|||||.
BL01561___gcv    299 ACACACCGTATCAGCCAGAAATTTCTCAAGGGGAGCTCCAGGCGATTTTC    348

BSNT_03664___    349 GAATTCCAAACGATGATCTGTGAACTGACAGGCATGGATATCGCCAACTC    398
                     |||||.|||||||||||.||.||.|||||.||||||||||||..||||||
BL01561___gcv    349 GAATTTCAAACGATGATTTGCGAGCTGACGGGCATGGATATCAGCAACTC    398

BSNT_03664___    399 CTCGATGTATGACGGCGGAACAGCCTTGGCGGAAGCAGCAATGCTTGCTT    448
                     .||||||||||||||.|||||.||.||.||.|||||.|||||||||||||
BL01561___gcv    399 GTCGATGTATGACGGAGGAACGGCGTTAGCCGAAGCGGCAATGCTTGCTT    448

BSNT_03664___    449 CAGGCCACACGAAAAAGAAAAAAATCGTTGTGTCAAAAACCGTGCATCCT    498
                     ||||.||.||.|||||||||||||||||.||.||..|||||||.|||||.
BL01561___gcv    449 CAGGACATACAAAAAAGAAAAAAATCGTCGTTTCGGAAACCGTCCATCCC    498

BSNT_03664___    499 GAATCGCGAGAAGTGCTGAAAACGTACGCAAAAGGTCAGTATATTGATGT    548
                     ||||||||.||.||.||.||||||||.||.|||||.|||||.||.|||||
BL01561___gcv    499 GAATCGCGCGAGGTTCTAAAAACGTATGCGAAAGGACAGTACATCGATGT    548

BSNT_03664___    549 TGTTGAAGTACC---------CG---CTGCGGATGGCGTTACGGATCTTG    586
                     .||.|||||.||         ||   |.||||||   .||..||.|||||
BL01561___gcv    549 GGTAGAAGTCCCTTCCAAAAACGGAACAGCGGAT---CTTGAGGCTCTTG    595

BSNT_03664___    587 ATGCATTGCGCCAAACCGTTTGCGAGAACACAGCCGCAGTGATCGTTCAG    636
                     |||         ||.||||.|||||..|.|||||.|||||||||||.||.
BL01561___gcv    596 ATG---------AAGCCGTCTGCGAAGATACAGCAGCAGTGATCGTCCAA    636

BSNT_03664___    637 TACCCGAATTTTTTCGGCCGGATCGAGCCGCTAAAGGATATTGAGCCTAT    686
                     ||.||.||.||||||||.||.||.||||||||.||.||.|||.|.||.||
BL01561___gcv    637 TATCCCAACTTTTTCGGGCGAATTGAGCCGCTGAAAGACATTAAACCGAT    686

BSNT_03664___    687 CGCTCATCAAGGGAAATCCATGTTTATTGTTTCAGCTAACCCGCTTGCGC    736
                     |||.|||.||||||||..||||||.||.|||||.||.||.|||||.||.|
BL01561___gcv    687 CGCCCATAAAGGGAAAAGCATGTTCATCGTTTCCGCCAATCCGCTGGCTC    736

BSNT_03664___    737 TAGGTCTTCTCACTCCGCC--GGGCAAGTTTCAGTCTGACATCGTCGTCG    784
                     |.||.|||.|.||.|||||  ||||  |||.....||||||||||.||||
BL01561___gcv    737 TCGGGCTTTTAACACCGCCCGGGGC--GTTGGGCGCTGACATCGTTGTCG    784

BSNT_03664___    785 GTGATGCGCAGCCTTTCGGCATTCCTTCAGCATACGGCGGCCCGCATTGC    834
                     |.|||||.|||||.|||||.||.|||.|.||.|.||||||.|||||.|||
BL01561___gcv    785 GAGATGCCCAGCCGTTCGGAATCCCTGCTGCTTTCGGCGGTCCGCACTGC    834

BSNT_03664___    835 GGCTTTTTTGCCGTTACTAAAAAATTAATGAGAAAGGTGCCGGGCCGTCT    884
                     ||.||.||||||||.||.||||||||.||||||||.|||||.||||||||
BL01561___gcv    835 GGATTCTTTGCCGTCACGAAAAAATTGATGAGAAAAGTGCCTGGCCGTCT    884

BSNT_03664___    885 CGTCGGACAAACGGAAGACGAAAACGGAAAAAGAGGCTTTGTGCTTACCC    934
                     .|||||.||.||||||||.||||||||.|||||.||.||.||.||.||||
BL01561___gcv    885 AGTCGGTCAGACGGAAGATGAAAACGGGAAAAGGGGATTCGTTCTCACCC    934

BSNT_03664___    935 TGCAAGCCAGGGAGCAGCATATCCGCCGAGATAAAGCAACATCAAATATA    984
                     ||||.|||.|.||||||||||||.|.||.|||||||||||||||||||||
BL01561___gcv    935 TGCAGGCCCGCGAGCAGCATATCAGACGGGATAAAGCAACATCAAATATA    984

BSNT_03664___    985 TGCTCGAACCAAGCTTTAAATGCGCTGGCAGCATCAGTGGCCATGACTGC   1034
                     |||||.|||||.||..|.||.|||||.||.||.|||||.||||||||.||
BL01561___gcv    985 TGCTCCAACCAGGCGCTCAACGCGCTTGCTGCGTCAGTCGCCATGACGGC   1034

BSNT_03664___   1035 TCTCGGAAAAAACGGCGTAAAAGATATAGCCCGCCAAAATCTCTTAAAAG   1084
                     .|||||||||||.|||||.||.||.||.||..|.||.||.||...|||||
BL01561___gcv   1035 GCTCGGAAAAAAAGGCGTCAAGGAAATCGCATGGCAGAACCTGCAAAAAG   1084

BSNT_03664___   1085 CCAACTATGCAAAGCAAGAAGCAAAAAAAGCAGGTCTTACCGTTATGTTT   1134
                     |....||.|||||..|||.|||.|||...||.||||||...||...||||
BL01561___gcv   1085 CGGCTTACGCAAAAGAAGCAGCTAAACGGGCCGGTCTTGAAGTCGCGTTT   1134

BSNT_03664___   1135 GACGGGCCGATATTTAATGAATTTGTCATCAAACTGGATGAGCCGGTGAG   1184
                     ||.||||||||.||.||.||.||||||||||.|||..||||         
BL01561___gcv   1135 GAGGGGCCGATGTTCAACGAGTTTGTCATCAGACTCAATGA---------   1175

BSNT_03664___   1185 AGCTGT-GAACAAGCGTTTG-----CTG-----GCAAAAGGCATGATTGG   1223
                     |.|||| |||.|||||..||     |||     |.||||  .||.||.||
BL01561___gcv   1176 ACCTGTCGAAAAAGCGAATGAACGCCTGCTTGAGAAAAA--TATTATCGG   1223

BSNT_03664___   1224 CGGATATGATCTTG--GGTTGACGTATCCGGAGCTGGACTGCCATATGCT   1271
                     .||.||.|||||.|  |.||  |.||||||||..|..|..|.||.|||||
BL01561___gcv   1224 AGGCTACGATCTCGGCGCTT--CATATCCGGATTTAAAACGGCACATGCT   1271

BSNT_03664___   1272 GATTGCTGTAACGGAGCTGAGAACAAAAGAAGAAATTGACGCACTCATTC   1321
                     |||.||.||.||.|||||.|||||||||||.|||||.||..|||||||..
BL01561___gcv   1272 GATCGCCGTGACAGAGCTCAGAACAAAAGAGGAAATCGATACACTCATGA   1321

BSNT_03664___   1322 AGGAATTGGGGGATCGCCATGAGTAA   1347
                     |.||||||||||||.|||||||.|||
BL01561___gcv   1322 ATGAATTGGGGGATTGCCATGAATAA   1347


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