Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03704 and BL01577
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_03704___yqgU.1.5803.seq
# -bsequence dna-align/BL01577___yqgU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03704___yqgU-BL01577___yqgU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03704___yqgU-BL01577___yqgU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03704___yqgU
# 2: BL01577___yqgU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1268
# Identity: 675/1268 (53.2%)
# Similarity: 675/1268 (53.2%)
# Gaps: 373/1268 (29.4%)
# Score: 1409.0
#
#
#=======================================
BSNT_03704___ 1 ATGCTGATGAGA---TCAGTTTGTT--TTAT------TCTGCTGGCGGTA 39
.||||| ||| ||.|| |||| ||||.||||.|
BL01577___yqg 1 ------TTGAGAGTTTCA--TTATTGATTATTGCCGCTCTGATGGCCG-- 40
BSNT_03704___ 40 TTGCT--GTTTAGTTTATCGGCATGC-----------GAACCATC----- 71
|.||| |..|.||| |||.|| |||..|||
BL01577___yqg 41 TGGCTGCGGCTGGTT-----GCACGCCGCAGCATCAAGAAGGATCAAAAA 85
BSNT_03704___ 72 ----TCATCA----------GCAGCAAAAACAGGCATCG-----GCGGCA 102
|||||| |.||..||||.||..|.|| ||.|.|
BL01577___yqg 86 GCGTTCATCATGAGGAGCCGGAAGGGAAAAGAGAAAGCGGTGCAGCAGTA 135
BSNT_03704___ 103 AAAGATGAGAAAAAAGACATCATACCGCTTTCCTCGGAAAAAGCG----- 147
|||||| ||||||| |.|||.|||| |||..|.||
BL01577___yqg 136 AAAGAT---AAAAAAG---TGATAGCGCT-------GAAGGACCGGCACT 172
BSNT_03704___ 148 --GATGGGGCGGAAGGCTGGCTGAAT-----AACAGCACAATATTATATA 190
||||.|.|||.|||.|||||..|| |||.| |||||||
BL01577___yqg 173 TTGATGAGACGGCAGGATGGCTTGATAATGAAACCG-------TTATATA 215
BSNT_03704___ 191 CTGCGTCTA---ATCCG----------ACGAAAACAGAGCTTTT--TGCG 225
|..|| |.| ||||| ..||||.||.|.|.|.| |
BL01577___yqg 216 CACCG-CAACCGATCCGGTCGGAGGAAGTGAAATCAAATCATATGAT--- 261
BSNT_03704___ 226 TACCGCATCTTTACAGGCAAAGCGAAAAAGCTCTATCAA-ACGGAT---- 270
||.||||.|||.|..|..||||.|.|||| ||| ||.|||
BL01577___yqg 262 ------ATATTTAAAGGGACGGGCAAAACGATCTA-CAAGACAGATGACA 304
BSNT_03704___ 271 -GGTCAAATCGTTGATGTTCAAATCAATGCGAGGGA-----GCAGATGAT 314
|.|.|.|.|||.| .||.|||| .||.|| || |||||
BL01577___yqg 305 GGCTGATAGCGTCG-----GAAGTCAA---CAGTGAAAAAGGC--ATGAT 344
BSNT_03704___ 315 TCTGCTGCAAATCACACATAGCCAAAAGACAGCAGTG-------GT---- 353
|||..|.||||.| |||..|| ||.||..|| ||
BL01577___yqg 345 TCTTATCCAAACC-------GCCGGAA-ACGGCTCTGAAATGAAGTTAAC 386
BSNT_03704___ 354 TTTGCTTAATGCAGAAGGAGAGAC-GC--TTTACGAAAAAGATTACGAAA 400
||||||||||..| .|||.||.|| || |||.| |||||.|||.|| .|
BL01577___yqg 387 TTTGCTTAATTTA-CAGGGGAAACAGCTGTTTGC-AAAAAAATTTCG-CA 433
BSNT_03704___ 401 CGTATGAGCTTG-AGGCTGCTTGGAATCAGTATGATCCTTATC----AAA 445
||.||||| ||| |.|..|..|||||||..|..|||||||.|| |.|
BL01577___yqg 434 CGCATGAG-TTGCAAGTGGACTGGAATCGATTCGATCCTTCTCTTTTATA 482
BSNT_03704___ 446 TGATGGTGACGGAATTCAATGAAA-ACTGGGATTTCCATACAT--ATCAG 492
| ||.||...|||| |.|||| |||||.||| || ||||.
BL01577___yqg 483 T----GTCACAACATTC-ACGAAAGACTGGAATT-------ATGAATCAA 520
BSNT_03704___ 493 G------TGAATGCTAAAAAAG-----ACG---AATCTTTCTTAAGCCCA 528
| || ||||.|||.||| ||| || ||.|...
BL01577___yqg 521 GCCTAATTG-ATGCAAAAGAAGAGCAAACGGAAAA--------AAACATC 561
BSNT_03704___ 529 GTACAGGTTCCG--TTCATTCATTGGACATCCAAAAATACATTTGATTAT 576
|.||||| ||| ||.|||||||||||.|||....|.||.|||||.|||
BL01577___yqg 562 GCACAGG--CCGCCTTTATTCATTGGACTTCCGCCGACACTTTTGAATAT 609
BSNT_03704___ 577 GTAAAA--GAGGGAA-GAGAC---GATAAAACAGG-GCCTTTATATACGT 619
.|.||| ||..||| |.||| || |||.|.|| .|||.|.|||.|.|
BL01577___yqg 610 ATCAAATGGAATGAACGGGACCGGGA-AAAGCCGGCTCCTGTTTATTCCT 658
BSNT_03704___ 620 TCGATACAGCTTCTAAGAC-----GGAACAGAAGCTTG-AG--GATGACG 661
.|...||||| .||| ||||.|||||||.| || ||||.||
BL01577___yqg 659 ACAGCACAGC-----GGACGGACGGGAAAAGAAGCTCGCAGGCGATGCCG 703
BSNT_03704___ 662 TTCTATTCTTCGATTCTTT---CCATCAAATGAGTTTTACTGTCAA---- 704
|.| ||| |||||..|.| |.|| |||.|..|.|..|| ||
BL01577___yqg 704 TAC--TTC-TCGATATTGTAGGCGAT---ATGCGGCTCATCGT-AACGCC 746
BSNT_03704___ 705 --------ATCAGCTTCCGGAGGAAAAGGG-----ACGTATCAGTTTAAA 741
||||||..| |||| ||.||| |||.|.
BL01577___yqg 747 TTCATCCGATCAGCGCC---------AGGGCACCTACATAT---TTTCAG 784
BSNT_03704___ 742 ACG---------CCGCAATCAACATCACCTGTTACAGCGAAATGGCCGCT 782
||| |.|.||..||.|| ||.||.| ||.|.||||||
BL01577___yqg 785 ACGTTTCTTCATCGGAAAAGAAAAT---CTCTTTC----AAGTTGCCGCT 827
BSNT_03704___ 783 CCAAG----CGAAATATACAAATTTGGCTCCAATGGAGTATGACTATGA- 827
| ||.|||||...|...||.|.||.|||||.||.|..|||||
BL01577___yqg 828 ----GTTCTCGGAATATGGCAGCCTGTCACCGATGGAATACGGTTATGAC 873
BSNT_03704___ 828 ---TGAAGCAGGAGGCCTGTTTTATACAT-TCAAACAAA-GCGGCG---- 868
.| |||.||| |||||||||||.| |||..|||| |.|.||
BL01577___yqg 874 CCTCG--GCATGAG--CTGTTTTATACGTATCAGCCAAATGAGTCGGGCT 919
BSNT_03704___ 869 ------ATGCATAT----------AAGCTCGCAGCAATCAATGTAGC-AT 901
||| ||.| ||.||| .||||| .|| |.
BL01577___yqg 920 CCTTGTATG-ATCTGATTTCCGTCAACCTC----AAATCA----GGCAAG 960
BSNT_03704___ 902 CGGGAGAGACA------AAAGATCTTGTGTCTCTGCGGGAAATGGAGCCG 945
||||| ||.|| |||.| || |||||||...|||
BL01577___yqg 961 CGGGA-AGTCATTCGTGAAAAA------GT-------GGAAATGCTTCCG 996
BSNT_03704___ 946 ATTCAAATATCTCCGAACGGGAAATATGCGTTATACGGCTTTCATTTTGA 995
|||....|||||||..|||||.|.|||||.||.|||||||.|..|...||
BL01577___yqg 997 ATTACCTTATCTCCTGACGGGGATTATGCATTGTACGGCTATACTCAGGA 1046
BSNT_03704___ 996 GCAAATTATTTTATTGAAATCACATGAAACGAAGCAACTCATCAT-TGAT 1044
.|||||.||||.|.|.||.||| .|||| ||||.|.|..|.| |||.
BL01577___yqg 1047 TCAAATCATTTCACTCAACTCA---AAAAC--AGCAGCGCCCCTTGTGAC 1091
BSNT_03704___ 1045 CAAAAGGAGATGGAATAA 1062
|||| |||||.
BL01577___yqg 1092 CAAA--------GAATAG 1101
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