Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02396 and BL01600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02396___yknW.1.5803.seq
# -bsequence dna-align/BL01600___yknW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02396___yknW-BL01600___yknW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02396___yknW-BL01600___yknW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02396___yknW
# 2: BL01600___yknW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity: 431/815 (52.9%)
# Similarity: 431/815 (52.9%)
# Gaps: 253/815 (31.0%)
# Score: 991.5
#
#
#=======================================
BSNT_02396___ 1 ATGGAAACGAATGTAGAA----AAAAACAGCGGAACGGCGACTGAAAAGC 46
||||||||||||.||||| ||||| |.|| |.||.|
BL01600___ykn 1 ATGGAAACGAATTTAGAAACTGAAAAA----GTAA---------AGAATC 37
BSNT_02396___ 47 CTTCACTTTTCGGAGTAATCACAAGTCCGTCC----GTTCAATTTGAAAG 92
|.|||.|..|||||.|.||.|| |||.|| |..||.||.||.||
BL01600___ykn 38 CATCATTGCTCGGATTGATTAC----CCGGCCCGGAGAACAGTTCGAGAG 83
BSNT_02396___ 93 AATAAGAGAAAGGCCGGCTGTATGGGGACCGCTTTTGATTGTTGCAGCAA 142
|||.|||||||.|||||||.|.|||...||||||.|.||||||
BL01600___ykn 84 AATGAGAGAAAAGCCGGCTTTCTGGTTTCCGCTTGTCATTGTT------- 126
BSNT_02396___ 143 TTATCATC--GTCGGTGCCG----------TGCT--GCAATCACTCGG-- 176
||| ||| ||||||..|| |||| ||.|..|..|||
BL01600___ykn 127 TTA--ATCTTGTCGGTTGCGGGAGCGTATATGCTCAGCGAAAAAACGGCG 174
BSNT_02396___ 177 -----TACGGATTATAGTGAGCTTTTGAAAAGCCAGGATACGCAAGGGCT 221
|||.|||| || |..||||.||| |||
BL01600___ykn 175 TTGTCTACCGATT----TG----TCGGAAATGCC-GGA------------ 203
BSNT_02396___ 222 ATCTGCTGAACAAATGGAAACTGTCGCAACAATAACCAAATTTGGCGGAA 271
|||||||..|.|..||.||| |.|| |||
BL01600___ykn 204 ---TGCTGAAGCATTTCAAGCTG------CTAT--------------GAA 230
BSNT_02396___ 272 TGGCA--GGCGCTATTATCGGCGGTATC-GCAGCATTATTTATTGC---- 314
.||.| ||| ||.||||||||.||| .|.|| ||..|.|||||
BL01600___ykn 231 GGGAATCGGC---ATCATCGGCGGGATCTTCGGC-TTTGTGATTGCCTTG 276
BSNT_02396___ 315 --------CCCTCTTATTTATTGGCTCTGTGTAAAAATATCAGGCGGAGT 356
|.||.|.|||||||||||...|||.||||| .||..|||.
BL01600___ykn 277 CTGATCAGCGCTTTAATTTATTGGCTGATTGTCAAAAT---CGGAAGAGG 323
BSNT_02396___ 357 TACGACATATAAAA--------AAATGCTTTCTCTCGGTCTGTTTGT--C 396
.||.|| .|| |.|||.||||.|| ||||||||.| .
BL01600___ykn 324 AACAAC-----CAATTTTGTTCACATGTTTTCGCT--GTCTGTTTTTACA 366
BSNT_02396___ 397 TCTTTAATTAGCAG-TCTCGGA----TTATTGGTTAATGGAATCGTTG-- 439
|.|||.||| ||.| |.||||| |.||.|| .|||.|.| ||
BL01600___ykn 367 TATTTTATT-GCGGCTATCGGACAATTCATAGG----CGGACTAG-TGAT 410
BSNT_02396___ 440 CTTTTA--CGACTGACGTGAATCCTCTTTACAGCACGA----CGTCACTG 483
||.||| |.|.|..|| |||| ||||| |||||| |
BL01600___ykn 411 CTATTATTCAAATATCG---ATCC---------CACGATCGTCGTCAC-G 447
BSNT_02396___ 484 GC------AGGGATTATCCCATCTGACGGG--GCTC---------TTGCC 516
.| .||.||.|||||..|.||||.| |||| ||
BL01600___ykn 448 TCTTTAAACGGCATCATCCCGGCAGACGAGCCGCTCAAATCGGTATT--- 494
BSNT_02396___ 517 AGCGTGTTAAATACCTTTGAAATTTTCAGCATCTGG-AGCTTTGTATTAT 565
|.|||| .|||||.|||||||..|||||| .|||.| .|||..
BL01600___ykn 495 -GGGTGT-------ATTTGATATTTTCACGATCTGGTCGCTCT-CATTGG 535
BSNT_02396___ 566 TAGCAATCGGACTTCACAAAACG--GGAGGCATCTCCAAAAAAGCCGGGT 613
|.||..|.||.|| .|||||.| ||.|||||||||||||||||.|..|
BL01600___ykn 536 TTGCCCTGGGTCT--CCAAAAGGTTGGGGGCATCTCCAAAAAAGCGGCTT 583
BSNT_02396___ 614 GGA----TTTCAGCAATCATTCTATTCGGAATTTTAGTTGT-------AT 652
||| |.|.|.| ||||||.|||| ||
BL01600___ykn 584 GGACCGGTGTGATC----------------ATTTTATTTGTGATCTCCAT 617
BSNT_02396___ 653 T---TTCGCTTTTTTCAGG---------------TTTAATCAATTCTGTG 684
| .|||||||..| ||| |||..||.||||..|.
BL01600___ykn 618 TCTGCTCGCTTTAAT-AGGCGGTATGGCGATCAATTTCTTCGATTCATTT 666
BSNT_02396___ 685 GCGGGTGCA---TAA 696
|..||.||| |||
BL01600___ykn 667 GAAGGAGCAATGTAA 681
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