Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02399 and BL01603
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02399___yknZ.1.5803.seq
# -bsequence dna-align/BL01603___yknZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02399___yknZ-BL01603___yknZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02399___yknZ-BL01603___yknZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02399___yknZ
# 2: BL01603___yknZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1242
# Identity: 845/1242 (68.0%)
# Similarity: 845/1242 (68.0%)
# Gaps: 96/1242 ( 7.7%)
# Score: 2773.5
#
#
#=======================================
BSNT_02399___ 1 ATGAGCCTGTTAGAAAACATCAGAATGGCTCTAAGCTCTGTCCTTGCCCA 50
||||..||..|.||||||.|.|||||||||.||||.||..|||||.||||
BL01603___ykn 1 ATGAATCTCATCGAAAACTTGAGAATGGCTTTAAGTTCCATCCTTTCCCA 50
BSNT_02399___ 51 TAAAATGCGTTCGATCTTAACGATGCTCGGCATTATCATTGGTGTAGGCT 100
||||.||||.|||||.|||||.|||||.||.||.||.|||||||||||||
BL01603___ykn 51 TAAACTGCGATCGATTTTAACAATGCTTGGAATCATTATTGGTGTAGGCT 100
BSNT_02399___ 101 CTGTCATTGTTGTCGTTGCGGTAGGACAAGGAGGCGAGCAAATGCTGAAG 150
|.||.|||||.||.|||||.|..||.||||||||.|||||.|||||.|||
BL01603___ykn 101 CCGTTATTGTCGTTGTTGCAGCGGGGCAAGGAGGAGAGCAGATGCTCAAG 150
BSNT_02399___ 151 CAGTCGATCAGCGGCCCGGGAAATACTGTGGAGCTGTACTATATGCCTAG 200
|||.||||||||||.||.||.||.||.||.||..|.||.|||..|||.||
BL01603___ykn 151 CAGACGATCAGCGGACCCGGCAACACGGTCGAAATCTATTATCAGCCCAG 200
BSNT_02399___ 201 CGACGAGGA-------GCTGGCAAGCAACCCGAACGCCGCAGCTGAAT-C 242
|.|.||.|| || |||.||||||||| | |
BL01603___ykn 201 CAATGAAGAATTAACCGC-------CAATCCGAACGCC---------TAC 234
BSNT_02399___ 243 T---ACG-----TTTACAGAAAACGATATTAAAGGTTTAAAAGGAATAGA 284
| ||| ||.||.|||.|.||.||.|.|.|.|||||...|.|.||
BL01603___ykn 235 TTAGACGCCGGCTTCACCGAAGAAGACATCAGAAGCTTAAAGTCACTCGA 284
BSNT_02399___ 285 AGGCATTAAACAAGTCGTTGCTTCGACTTCTGAA--------AGT--ATG 324
||||.|.|||||.|||||||| ||| ||| |||
BL01603___ykn 285 AGGCGTGAAACATGTCGTTGC----------GAAAACAACCGAGTCCATG 324
BSNT_02399___ 325 AAAGCGCGTTATCACGAAGAAGAAACCGATGCTACGGTTAACGGAATAAA 374
||.||.||.|..|..||.|||.|.||.|||||..|.||.|||||.||.||
BL01603___ykn 325 AATGCCCGCTTCCGGGATGAAAATACGGATGCCGCTGTAAACGGCATTAA 374
BSNT_02399___ 375 TGATGGATACATGAATGTCAATTCTTTAGAAATCGAAAGCGGCAGAACAT 424
|||.|||||.||.|...|||||||..|.||||||||||..||.|||..||
BL01603___ykn 375 TGACGGATATATCAGCATCAATTCGATGGAAATCGAAAAGGGAAGAGAAT 424
BSNT_02399___ 425 TTACCGACAATGACTTTCTCGCGGGGAATAGAGCCGGAATCATCTCTCAA 474
||.|.||..|.||.|..||.||.||.|..||.|.||..||.||.||.|..
BL01603___ykn 425 TTTCAGAAGAGGATTACCTTGCTGGAAGCAGGGTCGCCATTATTTCGCCG 474
BSNT_02399___ 475 AAGATGGCTGAAGAACTGTTCGATAAAACCTCCCCTTTAGGTGAAGTTGT 524
|||.|.||.|||||||||||...|.|....||.|||.|.||....||.||
BL01603___ykn 475 AAGCTTGCGGAAGAACTGTTTTCTCAGCAGTCGCCTCTCGGCCGTGTCGT 524
BSNT_02399___ 525 CTGGATAAACGGACAGCCCGTTGAAATTATCGGTGTGCTGAAAAAAGAAA 574
.||||||||..|.|||||.||||||||.|||||.||..|||||.||||||
BL01603___ykn 525 ATGGATAAATAGCCAGCCTGTTGAAATCATCGGCGTATTGAAAGAAGAAA 574
BSNT_02399___ 575 CAGGCTTGCTTTCTTTCGGTTTAAGTGAAATGTATGTGCCATTTAATATG 624
|.||..|||||.|.||.||..|.|.|||.||||||||.||||||...|||
BL01603___ykn 575 CCGGGCTGCTTGCATTGGGGATGAATGAGATGTATGTTCCATTTTCAATG 624
BSNT_02399___ 625 ATGAAATCCTCTTTTGGCACAAGCGATTTCAGTAAC---GTATCATTGCA 671
.|.|||||.||.||.||||..||||| |..|.|| ||.||..|.||
BL01603___ykn 625 TTAAAATCGTCCTTCGGCATCAGCGA---CTATGACTCTGTCTCCGTTCA 671
BSNT_02399___ 672 GGTCGAATCAGCAGACGACATAAAATCGGCAGGAAAA-------GAAGCA 714
.|..||.||.||.|||| |||.||||| |||||.
BL01603___ykn 672 AGCTGAGTCTGCCGACG-------ATCTGCAGG----CCGTCGGGAAGCG 710
BSNT_02399___ 715 GCACAGCTG--------GTAAATGACAATCATGGCACAGAGGATTCGTAT 756
| |||| ||.||..|.|||||.|||||...|||.|||||.
BL01603___ykn 711 G----GCTGCAGCGGCCGTCAACAAGAATCACGGCACTTCGGACTCGTAC 756
BSNT_02399___ 757 CAAGTGATGAACATGGAGGAGATTGCGGCCGGAATTGGCAAGGTAACGGC 806
.||||||||||||||||||..||.|||||||||||..||.||.|.||..|
BL01603___ykn 757 GAAGTGATGAACATGGAGGCCATAGCGGCCGGAATCAGCCAGATTACAAC 806
BSNT_02399___ 807 AATTATGACGACGATTATCGGCTCAATTGCAGGTATTTCCCTTT--TGGT 854
|||||||||||.|.|.|||||.|||||||||||.|||| |||| |.||
BL01603___ykn 807 AATTATGACGATGTTCATCGGTTCAATTGCAGGCATTT--CTTTACTCGT 854
BSNT_02399___ 855 CGGCGGAATCGGTGTCATGAATATCATGCTCGTATCAGTCACAGAACGGA 904
.||.||.|||||.|||||||||||.|||||.||.||.|||||.|||||||
BL01603___ykn 855 TGGGGGGATCGGCGTCATGAATATTATGCTGGTGTCGGTCACTGAACGGA 904
BSNT_02399___ 905 CACGGGAAATTGGAATCAGAAAATCCCTCGGTGCGACGAGGGGACAGATT 954
|..|||||||.||.||..|||||||.||.|||||.||.||.||.||||||
BL01603___ykn 905 CGAGGGAAATCGGGATTCGAAAATCGCTTGGTGCAACAAGAGGCCAGATT 954
BSNT_02399___ 955 CTGACTCAGTTTTTAATTGAGTCAGTCGT--ATTGACGCTGATTGGCGGT 1002
||||..||.||||||||.||.|| |||.| ||| ||.|||||.|||||.
BL01603___ykn 955 CTGATGCAATTTTTAATAGAATC-GTCTTTAATT-ACACTGATCGGCGGG 1002
BSNT_02399___ 1003 CTGGTCGGGATTGGCATTGGATACGGAGGGGCCGGGCTTGTTTCAGCCAT 1052
.||.|.||.||.|||.||||||||||.||.||.|..||.||.||.....|
BL01603___ykn 1003 GTGTTTGGCATCGGCCTTGGATACGGCGGTGCAGCCCTCGTATCGTTTTT 1052
BSNT_02399___ 1053 TGCGGGCTGGCCGTCACTCATATCCTGGCAGGTTGTATGCGGGGGCGTGC 1102
|||.||.||||||.|.|||.|.|||||||||||.||...|||.|||||.|
BL01603___ykn 1053 TGCCGGGTGGCCGCCGCTCGTTTCCTGGCAGGTGGTCCTCGGAGGCGTCC 1102
BSNT_02399___ 1103 TGTTCAGTATGCTCATTGGTGTTATTTTCGGCATGCTTCCTGCAAATAAA 1152
|||||||.|||...||.||..||||.||.||..|..|.||.||.||||||
BL01603___ykn 1103 TGTTCAGCATGGCGATCGGGATTATCTTTGGACTCATCCCGGCCAATAAA 1152
BSNT_02399___ 1153 GCTGCAAAGCTTGATCCCATTGAAGCGCTGCGTTATGAGTAG 1194
||.||....|||.||||.|||||.||..||.|.||||||||.
BL01603___ykn 1153 GCGGCCCGCCTTCATCCGATTGATGCATTGAGGTATGAGTAA 1194
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