Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02402 and BL01606
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_02402___fruA.1.5803.seq
# -bsequence dna-align/BL01606___fruA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02402___fruA-BL01606___fruA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02402___fruA-BL01606___fruA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02402___fruA
# 2: BL01606___fruA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1934
# Identity: 1463/1934 (75.6%)
# Similarity: 1463/1934 (75.6%)
# Gaps: 64/1934 ( 3.3%)
# Score: 5398.5
#
#
#=======================================
BSNT_02402___ 1 GTGAAAATAACTGAGCTTTTAACGAAGCATACGATAAAGCTTAATATTGA 50
.||||||||||||||||..||||.|||||||||||.|||.|.||..||||
BL01606___fru 1 ATGAAAATAACTGAGCTACTAACAAAGCATACGATCAAGTTAAACCTTGA 50
BSNT_02402___ 51 GAGCAAAGAAAAAGAAAATGTTATTGACGAAATGGTCACTGTTCTTGATA 100
|||||...|.||||||||.|||||.||.|||.|.||||..|||.|.|||.
BL01606___fru 51 GAGCAGCCAGAAAGAAAACGTTATCGAAGAACTCGTCAGCGTTTTGGATC 100
BSNT_02402___ 101 AGGCTGGAAAGTTAAATGACCGACAAGCCTATAAAGAAGCCATTTTAAAT 150
|||||||.|||||.|||||...|.|||.|||.||||||||..|..|.||.
BL01606___fru 101 AGGCTGGCAAGTTGAATGATAAAGAAGGCTACAAAGAAGCTGTGATCAAC 150
BSNT_02402___ 151 CGCGAAAGCCAAAGCTCCACGGGTATCGGTGAAGGAATCGCTATCCCCCA 200
|||||.|..||||||||.||.||||||||.|||||.|||||.|||||.||
BL01606___fru 151 CGCGAGAAACAAAGCTCTACCGGTATCGGCGAAGGCATCGCCATCCCGCA 200
BSNT_02402___ 201 TGCGAAAACGGCAAGCGTTATCAACCCGGCGATCGCGTTCGGACGTTCAA 250
||||||||||||||||||.|...|.||.||||||||||||||.|||||||
BL01606___fru 201 TGCGAAAACGGCAAGCGTCAAAGAGCCTGCGATCGCGTTCGGCCGTTCAA 250
BSNT_02402___ 251 AAGACGGCGTCGATTATGAATCATTAGACGGTCAGCC-GGCTCACTTAGT 299
|||.||||||||||||||||||..|.|||||.||||| .|| ||..|.||
BL01606___fru 251 AAGGCGGCGTCGATTATGAATCCCTTGACGGCCAGCCAAGC-CATCTCGT 299
BSNT_02402___ 300 GTTCATGATCGCGGCGACTGAAGGCGCAAACAACACTCACCTTGAAGCGT 349
.|||||||||||.||.||.||.||.|||||.|||||||||||.|||||.|
BL01606___fru 300 TTTCATGATCGCCGCTACAGACGGTGCAAATAACACTCACCTCGAAGCAT 349
BSNT_02402___ 350 TGTCAAGGCTTTCAACGCTGTTAATGCGTGAAGAAATCCGTAAGCAGCTC 399
|||||||.||.||.||..||.|.|||.|.||.||.||.||.||.|||||.
BL01606___fru 350 TGTCAAGACTGTCGACTTTGCTTATGAGGGAGGAGATTCGCAAACAGCTG 399
BSNT_02402___ 400 CTTGAAGCTGAGTCTGAAGATGCCATCATCGACATTATTAATCAGCACGA 449
|||||||||...||||||||.|..|||||||||||.||.||||||||.||
BL01606___fru 400 CTTGAAGCTTCATCTGAAGACGAAATCATCGACATCATCAATCAGCATGA 449
BSNT_02402___ 450 TAAAGATGATGACGAAGAGGAAGAGGAAGAGGAAGCGGCACCAGCACCTG 499
||||||||||||.|||||.||||||.|.|..||||.|||.||.|||||..
BL01606___fru 450 TAAAGATGATGATGAAGAAGAAGAGCAGGCCGAAGAGGCTCCTGCACCAT 499
BSNT_02402___ 500 CCGGAAAAGGAAAAATTTTAGCGGTTACTGCATGTCCGACAGGTATTGCC 549
|.|.||||||||||||..|.||||||||.|||||.||||||||.||.|||
BL01606___fru 500 CAGCAAAAGGAAAAATCCTTGCGGTTACAGCATGCCCGACAGGGATCGCC 549
BSNT_02402___ 550 CATACATTCATGGCTGCGGATGCCCTTAAAGAAAAAGCGAAAGAGCTTGG 599
||.||.|||||||||||||||||..|.|||||||||||||||||||||||
BL01606___fru 550 CACACGTTCATGGCTGCGGATGCTTTGAAAGAAAAAGCGAAAGAGCTTGG 599
BSNT_02402___ 600 TGTGGAAATTAAGGTCGAAACAAATGGGTCAAGCGGCATTAAGCACAAG- 648
.||.||.||.||.||.|||||.||.||.||||||||.||||| |.|.|
BL01606___fru 600 GGTTGATATCAAAGTTGAAACGAACGGTTCAAGCGGTATTAA--AAATGG 647
BSNT_02402___ 649 -CTCACTGCCCAAGAAATCGAAGATGCACCTGCAATCATTGTCGCAGCGG 697
||.||.|||||.||||||||||||||...|||.|||||||||||.||.|
BL01606___fru 648 TCTGACGGCCCAGGAAATCGAAGATGCCGTTGCGATCATTGTCGCCGCCG 697
BSNT_02402___ 698 ACAAGCAGGTTGAAATGGAACGTTTTAAAGGCAAGCGCGTACTTCAAGTT 747
||||||||||||||||||||||.|||.|||||||||..||..||.||||.
BL01606___fru 698 ACAAGCAGGTTGAAATGGAACGCTTTCAAGGCAAGCATGTCATTGAAGTA 747
BSNT_02402___ 748 CCTGTAACGGCGGGTATCAGACGTCCGCAAGAGCTTATCGAAAAAGCGAT 797
||||||||.||.|||||||||||||||||||||||.||.||..|.|||.|
BL01606___fru 748 CCTGTAACAGCAGGTATCAGACGTCCGCAAGAGCTGATTGAGCAGGCGCT 797
BSNT_02402___ 798 GAATCAAGATGCGCCGATTTATCAAGGCAGCGGCGGCGGTTCAGCAGCTT 847
|||.|||||.|||||.||.|||||.||.|..|||||||||.||.|.||||
BL01606___fru 798 GAAACAAGACGCGCCTATCTATCAGGGTAAAGGCGGCGGTGCAACCGCTT 847
BSNT_02402___ 848 CAAACGACGATGAAGAAGCGAAAGGCAAGTCTGGAAGCGGTATCGGAAAC 897
| .||.||.|.||..||.|||||.|| |.|||| |
BL01606___fru 848 C---TGAAGACGGAGCTGCCAAAGGAAA------AGGCGG---------C 879
BSNT_02402___ 898 GCGTTT-TATAAGCACCTGATGAGCGGTGTCAGCAACATGCTTCCGTTCG 946
| |||| ||.||.|||.|||||||||||||||||||||||||.|||||||
BL01606___fru 880 G-GTTTCTACAAACACTTGATGAGCGGTGTCAGCAACATGCTGCCGTTCG 928
BSNT_02402___ 947 TAGTCGGCGGCGGTATTCTCGTTGCGATTTCATTCTTCTGGGGAATTCAC 996
|.|||||.|||||.||..|.|||||||||||.|||||||||||||||.||
BL01606___fru 929 TCGTCGGGGGCGGGATCTTAGTTGCGATTTCGTTCTTCTGGGGAATTAAC 978
BSNT_02402___ 997 TCTGCTGATCCGAATGATCCTAGCTACAACACGTTTGCAGCAGCATTAAA 1046
.|..|..|.|||...|||||.|..||.||...|||.||.||.|.||||||
BL01606___fru 979 GCGACCAAGCCGGGAGATCCGACTTATAATGAGTTCGCTGCTGTATTAAA 1028
BSNT_02402___ 1047 CTTTATCGGCGG--CGACAATGCATTAAAACTGATTGTTGCAGTTCTGGC 1094
...|||.||||| || ||||||.|...|.|.|||||.||.||..||||
BL01606___fru 1029 TAATATTGGCGGAACG--AATGCACTTGGATTAATTGTCGCTGTATTGGC 1076
BSNT_02402___ 1095 CGGTTTCATTGCGATGAGTATTGCAGATCGTCCTGGTTTTGCGCCTGGTA 1144
|||.||.||.||||||||.||||||||||||||.||.|||||||||||||
BL01606___fru 1077 CGGATTTATCGCGATGAGCATTGCAGATCGTCCGGGATTTGCGCCTGGTA 1126
BSNT_02402___ 1145 TGGTCGGAGGATTTATGGCTACTCAAGCGAATGCTGGATTCTTAGGCGGC 1194
|||||||.||.||.|||||.||.|||||....||.||.||||||||||||
BL01606___fru 1127 TGGTCGGCGGTTTCATGGCGACACAAGCTGGCGCAGGTTTCTTAGGCGGC 1176
BSNT_02402___ 1195 TTAATTGCCGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGT 1244
.|.||||||||.|||.|.||.||||||.|.||..|..|..||||||||||
BL01606___fru 1177 CTGATTGCCGGTTTCTTAGCTGGTTATATTGTTGTCCTGTTGAAAAAAGT 1226
BSNT_02402___ 1245 ATTTACGTT--TATCCCTC-AGTCACTTGATGGATTAAAACCTGTTTTGA 1291
.|| ||.| |.|.||.| ||| .|||||.||.|||||||||||..||.
BL01606___fru 1227 GTT--CGCTGGTCTGCCGCAAGT-GCTTGACGGTTTAAAACCTGTGCTGC 1273
BSNT_02402___ 1292 TTTACCCGCTGTTCGGTATTTTTATCACTGGCGT-ATTAATGCAATTTGT 1340
|.|||||||||||.||.||.||..|.||.||..| ||| |||||||.|||
BL01606___fru 1274 TCTACCCGCTGTTTGGAATATTCTTGACCGGAATCATT-ATGCAATATGT 1322
BSNT_02402___ 1341 CGTCAATACACCTGTAGCGGCA-----TTTATGAATTTCTTAACAAACTG 1385
.||||||||.||||| || .|||||.|...|.|.|||.|.||
BL01606___fru 1323 TGTCAATACGCCTGT-----CAAGTACATTATGGACGGCATGACACATTG 1367
BSNT_02402___ 1386 GCTTGAAAGCCTTGGTACTGGAAATCTTGTGTTAATGGGTATTATCTTGG 1435
|||||||.|.|||||.||.|||||.|||||..|||||||||||.|.||.|
BL01606___fru 1368 GCTTGAAGGTCTTGGAACAGGAAACCTTGTCGTAATGGGTATTGTTTTAG 1417
BSNT_02402___ 1436 GCGGCATGATGGCGATTGATATGGGCGGCCCGCTTAATAAAGCAGCCTTT 1485
||||.|||||||||||||||||||||||.|||.|.||.|||||.||||||
BL01606___fru 1418 GCGGTATGATGGCGATTGATATGGGCGGTCCGATCAACAAAGCGGCCTTT 1467
BSNT_02402___ 1486 ACGTTCGGTATCGCCATGATCGATGCAGGCAACTATGCGCCTCATGCAGC 1535
||.|||||||||||.|||||.||.||.||.||||.||.||||||.|||||
BL01606___fru 1468 ACATTCGGTATCGCAATGATTGAAGCTGGAAACTTTGGGCCTCACGCAGC 1517
BSNT_02402___ 1536 AATCATGGCCGGCGGTATGGTTCCTCCGCTTGGTATCGCACTTGCAACAA 1585
.||||||||.|||||||||||.|||||||||||.||.||.||||||||.|
BL01606___fru 1518 CATCATGGCAGGCGGTATGGTGCCTCCGCTTGGAATTGCCCTTGCAACGA 1567
BSNT_02402___ 1586 CCATTTTCAGAAACAAATTCACTCAGCGTGACCGTGAAGCTGGTATTACA 1635
|..|.||.|.|||.||||||.|..|.||.||.||.|||||.||.|||||.
BL01606___fru 1568 CTTTCTTTAAAAATAAATTCTCAAAACGGGATCGCGAAGCCGGAATTACC 1617
BSNT_02402___ 1636 TGCTATTTCATGGGAGCT--GCTTTCGTAACAGAGGGAGCGATCCCATTT 1683
..|||..|.|||| ||| .|.||..|.||.||.||.|||||.||.|||
BL01606___fru 1618 AACTACGTGATGG--GCTTGTCATTTATTACTGAAGGTGCGATTCCTTTT 1665
BSNT_02402___ 1684 GCTGCGGCTGATCCGCTTCGCGTCATACCAGCTGCTGTA--GTCGGTGCA 1731
||.||.||.||||||...||||||||.||.||| |||| .||||..||
BL01606___fru 1666 GCGGCAGCAGATCCGGCACGCGTCATTCCTGCT--TGTATCATCGGGTCA 1713
BSNT_02402___ 1732 GCTGTTGCCGGCGGATTAACTGAATTCTTCCGAGTAACGCTTCCGGCGCC 1781
||.|||||||||||..|..||.||||.||||..||.||.||.|..|||||
BL01606___fru 1714 GCAGTTGCCGGCGGTCTGTCTCAATTTTTCCATGTCACACTGCAAGCGCC 1763
BSNT_02402___ 1782 TCATGGAGGAGTATTCGTAGCT-TTCATT---ACAAACCATCCGATGCTT 1827
.|||||.|||.||||||| .|| |||.|| ||.||.|||.||.||||.
BL01606___fru 1764 GCATGGCGGAATATTCGT-TCTCTTCTTTACGACGAATCATGCGCTGCTG 1812
BSNT_02402___ 1828 TACCTTTTAAGTATCGTGATCGGTGCTGTCGTGATGGCAATTATCCTCGG 1877
||.||..|.||.|||.||||||||||.||.||||..||..|.||.|||||
BL01606___fru 1813 TATCTCCTCAGCATCTTGATCGGTGCGGTTGTGACAGCTTTGATTCTCGG 1862
BSNT_02402___ 1878 TATCGTCAAAAAACCTGTT---ACAGAAAAATAA 1908
..|..|.|||||.||.||| ||.|||||||||
BL01606___fru 1863 CGTTTTGAAAAAGCCGGTTCCAACTGAAAAATAA 1896
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