Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02430 and BL01616
See
Amino acid alignment /
Visit
BSNT_02430 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_02430___pdhA.1.5803.seq
# -bsequence dna-align/BL01616___pdhA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02430___pdhA-BL01616___pdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02430___pdhA-BL01616___pdhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02430___pdhA
# 2: BL01616___pdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1118
# Identity: 930/1118 (83.2%)
# Similarity: 930/1118 (83.2%)
# Gaps: 4/1118 ( 0.4%)
# Score: 3874.0
#
#
#=======================================
BSNT_02430___ 1 ATGGCTGCAAAAACGAAAAAAGCTATCGTTGACAGTAAGAAGCAATTTGA 50
|||||||||||||||||||||||.||||||||.||.||.||||||||.||
BL01616___pdh 1 ATGGCTGCAAAAACGAAAAAAGCAATCGTTGATAGCAAAAAGCAATTCGA 50
BSNT_02430___ 51 TGCCATTAAAAAGCAGTTCGAAACGTTCCAAATTTTAAATGAAAAGGGAG 100
|||||||||||||||||||||||||||.||||||||.||||||.|.||.|
BL01616___pdh 51 TGCCATTAAAAAGCAGTTCGAAACGTTTCAAATTTTGAATGAAGAAGGCG 100
BSNT_02430___ 101 AAGTCGTGAATGAAGCGGCGATGCCTGATTTAACTGATGATCAATTAAAA 150
|||||||.|||||||||||.|||||.|||.||.|||||||||||||||||
BL01616___pdh 101 AAGTCGTTAATGAAGCGGCAATGCCGGATCTATCTGATGATCAATTAAAA 150
BSNT_02430___ 151 GAGCTAATGCGCCGCATGGTATTTACGCGTGTGCTTGACCAACGCTCTAT 200
||..||||||||||||||||.|.|||.||..|..|.||.||.||.|||||
BL01616___pdh 151 GAATTAATGCGCCGCATGGTGTATACACGCATTTTGGATCAGCGTTCTAT 200
BSNT_02430___ 201 CTCATTAAACCGTCAAGGACGTCTCGGATTTTACGCTCCTACTGCGGGTC 250
.||.||.|||.|.|||||.||.||.||.||.|||||.||.|||||.||||
BL01616___pdh 201 TTCTTTGAACAGACAAGGCCGCCTTGGCTTCTACGCGCCGACTGCCGGTC 250
BSNT_02430___ 251 AAGAAGCTTCTCAGATTGCAACGCATTTCGCGCTTGAAAAAGAAGACTTT 300
|.|||||||||||.|||||.|||||||||||||||||||||||||||||.
BL01616___pdh 251 AGGAAGCTTCTCAAATTGCTACGCATTTCGCGCTTGAAAAAGAAGACTTC 300
BSNT_02430___ 301 GTTCTTCCTGGATACCGTGATGTGCCTCAGTTAATTTGGCACGGCCTTCC 350
||||||||.||.|||||||||||.||.|||.|.||.||||||||.|||||
BL01616___pdh 301 GTTCTTCCGGGCTACCGTGATGTTCCGCAGCTGATCTGGCACGGACTTCC 350
BSNT_02430___ 351 ATTATATCAAGCGTTTCTT-TTCTCTCGCGGACATTTCAGAGGAAACCAA 399
..|.|||||||| .||||| ||||||||||||||.|||.|.||.||||||
BL01616___pdh 351 GCTTTATCAAGC-ATTCTTGTTCTCTCGCGGACACTTCCGCGGCAACCAA 399
BSNT_02430___ 400 ATGCCTGATGATGTGAATGCCCTTTCTCCACAAATCATTATCGGTGCTCA 449
||||||||.|||||.|||||.|||||.||.|||||.|||||.|||||.||
BL01616___pdh 400 ATGCCTGACGATGTCAATGCGCTTTCACCGCAAATTATTATTGGTGCGCA 449
BSNT_02430___ 450 ATACATTCAAACGGCCGGTGTTGCGCTAGGTATTAAAAAACGCGGTAAGA 499
||||||.||||||||.||.|||||.||.||..|.|||||||||||.||..
BL01616___pdh 450 ATACATCCAAACGGCTGGCGTTGCACTCGGCTTGAAAAAACGCGGCAAAC 499
BSNT_02430___ 500 AAGCTGTCGCAATCACTTACACTGGTGACGGCGGAGCTTCTCAAGGGGAC 549
|.|||||.||.|||||.||.|||||.||||||||.|||||.|||||.|||
BL01616___pdh 500 AGGCTGTGGCGATCACCTATACTGGAGACGGCGGTGCTTCCCAAGGTGAC 549
BSNT_02430___ 550 TTCTACGAAGGAATTAACTTTGCCGGAGCTTATAAAGCACCTGCAATCTT 599
||||||||||||||.|||||||||||.||.||||||||.||.||.||.||
BL01616___pdh 550 TTCTACGAAGGAATCAACTTTGCCGGTGCGTATAAAGCTCCAGCTATTTT 599
BSNT_02430___ 600 CGTGGTACAAAACAACCGTTACGCGATTTCAACTCCTGTTGAAAAACAAT 649
|||.||.|||||||||||.||.|||||||||||.|||||||||||.||||
BL01616___pdh 600 CGTTGTTCAAAACAACCGCTATGCGATTTCAACACCTGTTGAAAAGCAAT 649
BSNT_02430___ 650 CTGCAGCTGAAACAATTGCACAAAAAGCTGTAGCTGCCGGTATTGTCGGC 699
|.||||||.|||||||.||.||||||||||..|||||.|||||.||||||
BL01616___pdh 650 CAGCAGCTCAAACAATCGCCCAAAAAGCTGCGGCTGCAGGTATCGTCGGC 699
BSNT_02430___ 700 GTACAAGTAGACGGAATGGATCCGCTTGCTGTATACGCAGCAAC-TGCTG 748
||.||||||||||||||||||.|.||||||||||||||.||.|| .|| |
BL01616___pdh 700 GTTCAAGTAGACGGAATGGATGCCCTTGCTGTATACGCTGCGACACGC-G 748
BSNT_02430___ 749 AAGCACGCGAGCGCGCAATCAACGGCGAAGGTCCAACACTAATTGAAACA 798
||||||||||||||||..|.|||||||||||.||.||.||.||.|||||.
BL01616___pdh 749 AAGCACGCGAGCGCGCTGTAAACGGCGAAGGCCCTACCCTGATCGAAACG 798
BSNT_02430___ 799 CTTACATTCCGTTATGGCCCGCACACAATGGCTGGTGACGATCCTACTAA 848
|||...||||||||.||.||.||.||.|||||.|||||||||||.||.||
BL01616___pdh 799 CTTTGCTTCCGTTACGGTCCTCATACTATGGCCGGTGACGATCCGACAAA 848
BSNT_02430___ 849 ATATCGTACAAAAGAAATCGAAAATGAGTGGGAACAAAAAGATCCGCTTG 898
|||.|||||||||||||||||.|||||||||||.||.|||||||||||||
BL01616___pdh 849 ATACCGTACAAAAGAAATCGAGAATGAGTGGGAGCAGAAAGATCCGCTTG 898
BSNT_02430___ 899 TACGTTTCCGTGCGTTCCTTGAAAACAAAGGCTTATGGTCTGAAGAAGAA 948
|.||||||||...||||.|.||||||||||||.|.|||||||||||||||
BL01616___pdh 899 TCCGTTTCCGCAAGTTCTTGGAAAACAAAGGCCTTTGGTCTGAAGAAGAA 948
BSNT_02430___ 949 GAAGCAAAAGTGATTGAGGATGCGAAAGAAGAAATTAAGCAAGCGATCAA 998
|||...||.||.|||||.||.||||||||||||||.|||||.||||||||
BL01616___pdh 949 GAAAACAAGGTAATTGAAGAAGCGAAAGAAGAAATCAAGCAGGCGATCAA 998
BSNT_02430___ 999 AAAAGCTGATGCTGAACCGAAGCAAAAAGTAACTGATTTAATGAAAATCA 1048
|||||||||.|..||.||||||||||||||.||.||..|.||..|.||.|
BL01616___pdh 999 AAAAGCTGACGAAGAGCCGAAGCAAAAAGTGACCGACCTGATCGACATTA 1048
BSNT_02430___ 1049 TGTACGAAAAAATGCCTCACAACCTTGAGGAGCAATTTGAAATTTATACA 1098
||||.|||.|..|.|||.|||||||||..||.|||...||||||||||.|
BL01616___pdh 1049 TGTATGAAGAGCTTCCTTACAACCTTGTAGAACAAAAGGAAATTTATAAA 1098
BSNT_02430___ 1099 CAGAAGGAGTCGAAGTAA 1116
.|||||||||||||||||
BL01616___pdh 1099 GAGAAGGAGTCGAAGTAA 1116
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.