Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02432 and BL01618

See Amino acid alignment / Visit BSNT_02432 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_02432___pdhC.1.5803.seq
#    -bsequence dna-align/BL01618___pdhC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02432___pdhC-BL01618___pdhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02432___pdhC-BL01618___pdhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02432___pdhC
# 2: BL01618___pdhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1361
# Identity:    1075/1361 (79.0%)
# Similarity:  1075/1361 (79.0%)
# Gaps:         100/1361 ( 7.3%)
# Score: 4400.5
# 
#
#=======================================

BSNT_02432___      1 GTGGCATTTGAATTTAAACTTCCAGATATCGGGGAAGGTATCCACGAAGG     50
                     |||||||||||||||||||||||.||||||||||||||.|||||||||||
BL01618___pdh      1 GTGGCATTTGAATTTAAACTTCCGGATATCGGGGAAGGAATCCACGAAGG     50

BSNT_02432___     51 CGAAATCGTAAAATGGTTTGTCAAGCCTAACGACGAGGTAGACGAAGATG    100
                     |||||||||.||||||||.||||||||.||||||||||||.|||||||||
BL01618___pdh     51 CGAAATCGTGAAATGGTTCGTCAAGCCAAACGACGAGGTAAACGAAGATG    100

BSNT_02432___    101 ATGTACTGGCTGAAGTCCAAAATGATAAAGCAGTAGTAGAAATTCCTTCA    150
                     |.||..||||.||.||.|||||.|||||||||||.|||||||||||||||
BL01618___pdh    101 ACGTTTTGGCAGAGGTACAAAACGATAAAGCAGTTGTAGAAATTCCTTCA    150

BSNT_02432___    151 CCTGTTAAAGGAAAAGTATTAGAATTAAAAGTTGAAGAGGGAACGGTTGC    200
                     ||||||||||||||||||||||||||||||||||||||||||||.||.||
BL01618___pdh    151 CCTGTTAAAGGAAAAGTATTAGAATTAAAAGTTGAAGAGGGAACAGTCGC    200

BSNT_02432___    201 AACTGTTGGACAAACGATTATTACGTTTGATGCACCTGGTTACGAAGATC    250
                     |||.|||||.||.|||||.||.||.|||||||||||.|||||||||||||
BL01618___pdh    201 AACCGTTGGGCAGACGATCATCACATTTGATGCACCAGGTTACGAAGATC    250

BSNT_02432___    251 TTCAATTTAAAGGCAGCGACGAGTCTGACGATGCGAAAACTGAAGCACAA    300
                     |||||||.||||   |||||||.||.|.|||.||||||.|.||       
BL01618___pdh    251 TTCAATTCAAAG---GCGACGAATCAGGCGAAGCGAAAGCGGA-------    290

BSNT_02432___    301 GTTCAGTCAACTGCAGAAGCTGGAAAAGACGTTGCGAAAGAA---GA-GC    346
                                   ||||||||.||||         .|||||   || ||
BL01618___pdh    291 --------------AGAAGCTGAAAAA---------CAAGAAACTGATGC    317

BSNT_02432___    347 AAGCTCAAGAGCCTGCAAAAGCTACTGGCGCAGGACAGC--AGGATCAAG    394
                     |          ||||||.||||..|       ||| |||  |.||.||||
BL01618___pdh    318 A----------CCTGCAGAAGCAGC-------GGA-AGCAAACGAGCAAG    349

BSNT_02432___    395 CTGAAGTTGACCCGAACAAACGCGTGATCGCTATGCCTTCCGTACGTAAA    444
                     |.||.|..||.|||||.||.|||||.||.||.|||||.||.||.||.||.
BL01618___pdh    350 CGGATGCAGATCCGAATAAGCGCGTCATTGCAATGCCATCTGTTCGCAAG    399

BSNT_02432___    445 TATGCTCGTGAAAAAGGCGTAGACATCCGT-AAGGTTACTGGTTCAGGCA    493
                     |||||.||.|||||||||||.||.|| ||| ||.|||.|.|||||.||||
BL01618___pdh    400 TATGCCCGCGAAAAAGGCGTTGATAT-CGTGAATGTTTCAGGTTCCGGCA    448

BSNT_02432___    494 ACAACGGACGTGTTGTAAAAGAAGATATCGACAGCTTTGTAAACGGAGGA    543
                     |.|||||.||.|||.|.||||||||||||||||||||..|||||||||||
BL01618___pdh    449 AAAACGGCCGCGTTCTGAAAGAAGATATCGACAGCTTCTTAAACGGAGGA    498

BSNT_02432___    544 ----------GCGC-AAG-------AAGCTGCACCGCAAGAAACAGCTGC    575
                               .||| |||       ||||||      ||||.|.|||   
BL01618___pdh    499 ACTGCCGGAGACGCTAAGGCTGCTCAAGCTG------AAGAGAAAGC---    539

BSNT_02432___    576 ACCACAAGAAACAGCTGCTA----AACCGGCTGCTGC---ACCAGCTCCA    618
                           ||||.|.||||| |    ||||.||.|||||   .|.||..||.
BL01618___pdh    540 ------AGAACCTGCTGC-ACAGCAACCTGCAGCTGCGGTTCAAGTGCCT    582

BSNT_02432___    619 GAGGGCGAATTCCCAGAAACACGCGAAAAAATGAGCGGTATCCGTAAAGC    668
                     ||.|||||||||||.|||||.|||||.|||||||||||.|||||.|||||
BL01618___pdh    583 GAAGGCGAATTCCCTGAAACTCGCGAGAAAATGAGCGGAATCCGCAAAGC    632

BSNT_02432___    669 AATTGCAAAAGCGATGGTTAACTCTAAACACACTGCTCCTCATGTAACGT    718
                     .|||||||||||.|||||.|||||.|||||.||.|||||.||.||.||.|
BL01618___pdh    633 CATTGCAAAAGCTATGGTCAACTCAAAACATACCGCTCCACACGTTACAT    682

BSNT_02432___    719 TAATGGACGAAGTGGACGTAACAAACCTTGTTGCACATCGTAAACAGTTC    768
                     |||||||||||||.||.||.|||||||||||.||.||.||.||.|||||.
BL01618___pdh    683 TAATGGACGAAGTCGATGTGACAAACCTTGTCGCTCACCGCAAGCAGTTT    732

BSNT_02432___    769 AAACAAGTTGCTGCTGATCAAGGAATCAAGCTGACTTACTTGCCTTACGT    818
                     |||||||||||.||||||||||||||.||||||||||||.||||||||||
BL01618___pdh    733 AAACAAGTTGCGGCTGATCAAGGAATTAAGCTGACTTACCTGCCTTACGT    782

BSNT_02432___    819 TGTAAAAGCTCTTACATCTGCACTGAAAAAATTCCCTGTTTTAAACACGT    868
                     .|||||||||.|.|||||.||.||||||||||..||.||..|.||.||.|
BL01618___pdh    783 GGTAAAAGCTTTGACATCAGCTCTGAAAAAATATCCAGTCCTGAATACAT    832

BSNT_02432___    869 CAATTGACGATAAAACAGATGAAGTCATCCAAAAACATTACTTCAACATC    918
                     ||||||||||.||.|||||||||||.||.||.||.||.||||.|||||||
BL01618___pdh    833 CAATTGACGACAATACAGATGAAGTGATTCAGAAGCACTACTACAACATC    882

BSNT_02432___    919 GGTATCGCTGCTGACACTGAAAAAGGCTTGCTTGTACCGGTTGTGAAAAA    968
                     |||||.||.||.|||||||||||||||.|||||||.||||||||.|||||
BL01618___pdh    883 GGTATTGCGGCAGACACTGAAAAAGGCCTGCTTGTGCCGGTTGTTAAAAA    932

BSNT_02432___    969 TGCAGATCGTAAATCTGTCTTTGAAATTTCTGATGAGATCAATGGCCTTG   1018
                     |||.||.||.|||.|..|.|||||.|||||..|.||.|||||.|..||||
BL01618___pdh    933 TGCGGACCGCAAAGCGATTTTTGAGATTTCAAACGAAATCAACGAGCTTG    982

BSNT_02432___   1019 CAACAAAAGCTCGTGAAGGCAAGCTTGCTCCAGCTGAAATGAAAGGCGCA   1068
                     |.||||||||.||.||||||||.||||||||.|||||||||||||||||.
BL01618___pdh    983 CGACAAAAGCACGCGAAGGCAAACTTGCTCCTGCTGAAATGAAAGGCGCT   1032

BSNT_02432___   1069 TCTTGCACAATTACAAACATCGGTTCTGCCGGCGGACAATGGTTCACTCC   1118
                     ||||||||||||||.||.|||||.|||||||||||.|||||||||||.||
BL01618___pdh   1033 TCTTGCACAATTACGAATATCGGCTCTGCCGGCGGTCAATGGTTCACACC   1082

BSNT_02432___   1119 GGTTATCAACCATCCAGAAGTTGCGATTCTTGGTATCGGACGCATTGCAG   1168
                     |||||||||||||||.|||||||||||.|||||.|||||.|||||.||.|
BL01618___pdh   1083 GGTTATCAACCATCCGGAAGTTGCGATCCTTGGAATCGGCCGCATCGCTG   1132

BSNT_02432___   1169 AAAAAGCGATTGTTCGTGATGGCGAAATCGTAGCAGCTCCAGTCTTAGCT   1218
                     |.|||||..|.||||||||.|||||||||||.||.||.||.||..|.|||
BL01618___pdh   1133 AGAAAGCTGTCGTTCGTGACGGCGAAATCGTCGCTGCACCTGTTCTGGCT   1182

BSNT_02432___   1219 CTTTCTCTCAGCTTCGACCACCGTATGATCGACGGAGCAACTGCGCAAAA   1268
                     ||||||||.|||||.||||||||||||||||||||.||||||||.|||||
BL01618___pdh   1183 CTTTCTCTAAGCTTTGACCACCGTATGATCGACGGCGCAACTGCACAAAA   1232

BSNT_02432___   1269 TGCATTAAATCACATCAAGCGTTTACTGAACGATCCACAATTAATTTTAA   1318
                     .||.||.|||||||||||||||||.|||||||||||||||||||||||||
BL01618___pdh   1233 CGCGTTGAATCACATCAAGCGTTTGCTGAACGATCCACAATTAATTTTAA   1282

BSNT_02432___   1319 TGGAGGCGTAA   1329
                     |||||||||||
BL01618___pdh   1283 TGGAGGCGTAA   1293


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