Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00439 and BL01646

See Amino acid alignment / Visit BSNT_00439 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence dna-align/BSNT_00439___ycbD.1.5803.seq
#    -bsequence dna-align/BL01646___ybcD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00439___ycbD-BL01646___ybcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00439___ycbD-BL01646___ybcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00439___ycbD
# 2: BL01646___ybcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1495
# Identity:    1115/1495 (74.6%)
# Similarity:  1115/1495 (74.6%)
# Gaps:          56/1495 ( 3.7%)
# Score: 3994.5
# 
#
#=======================================

BSNT_00439___      1 ATGTCTGTGAT-CA-CGGAACAAAACACGTATCTCAACTTTATTAAAGGA     48
                     ||||||||  | || |.|||...||.||||||.||||||||||.||.||.
BL01646___ybc      1 ATGTCTGT--TGCAGCTGAAAGTAAAACGTATTTCAACTTTATCAACGGC     48

BSNT_00439___     49 GAGTGGGTTAAGTCTCAATCAGGCGATATGG-TCA-AGGTCGAAAACCCT     96
                     ...|||||.|||.||.||||.||||..|||| .|| ||.|.|  ||.||.
BL01646___ybc     49 CGCTGGGTGAAGGCTGAATCGGGCGGGATGGAACAGAGCTTG--AATCCG     96

BSNT_00439___     97 GCCGAT-----GTGAATGACATTGTCGGATATGTACAGAATTCAACGGCT    141
                     ||.|||     |     ||.||.|||||...|||.||.||.||..||..|
BL01646___ybc     97 GCAGATACACGG-----GATATCGTCGGGCTTGTGCAAAAATCTTCGATT    141

BSNT_00439___    142 GAAGATGTGGAACGTGCCGTCGCCGCCGCCAATGAAGCCAAAACGGCTTG    191
                     ||.|||||.||.||.||.||.|..||.|||||..|.|||||||.|||.||
BL01646___ybc    142 GAGGATGTAGACCGGGCAGTTGAAGCGGCCAAGCAGGCCAAAAAGGCGTG    191

BSNT_00439___    192 GAGAAAGCTGACGGGTGCCGAGCGCGGCCAATACTTATACAAAACAGCGG    241
                     ||||||||||.||||.||.||||||||.||||.|.|.|||||..|.||.|
BL01646___ybc    192 GAGAAAGCTGTCGGGCGCGGAGCGCGGTCAATTCCTTTACAAGGCCGCTG    241

BSNT_00439___    242 ATATCATGGAGCAGCGCTTGGAGGAAATCGCCGCCTGTGCAACGCGTGAA    291
                     |.||||||||.||||||.|.||.|||||.||||..|||||.|||||||||
BL01646___ybc    242 ACATCATGGAACAGCGCCTCGATGAAATTGCCGAATGTGCGACGCGTGAA    291

BSNT_00439___    292 ATGGGTAAAACATTGCCGGAAGCGAAGGGAGAAACAGCCCGTGGGATTGC    341
                     |||||.||||||.||||.|||||.||.||.||||||||.||.||.||.||
BL01646___ybc    292 ATGGGCAAAACACTGCCTGAAGCAAAAGGCGAAACAGCGCGGGGAATCGC    341

BSNT_00439___    342 CATTCTGCGCTATTACGCCGGAGAGGGCATGCGAAAAACGGGTGACGTCA    391
                     .|||||..|.||.||.|||||||||||..||||.|||||.|||||.||.|
BL01646___ybc    342 GATTCTCAGATACTATGCCGGAGAGGGGCTGCGGAAAACAGGTGATGTGA    391

BSNT_00439___    392 TTCCGTCTACTGACAAAGCCGCGCTCATGTTTACCACCCGTGTTCCGCTC    441
                     |||||||.||.||...|.||||..|.||||..||...|.|.||.||||||
BL01646___ybc    392 TTCCGTCGACCGATTCATCCGCTTTTATGTACACAGACAGGGTGCCGCTC    441

BSNT_00439___    442 GGTGTGGTCGGCGTGATTTCTCCGTGGAACTTCCCAGTGGCGATTCCGAT    491
                     ||.||.||||||||.||.||.||||||||.|||||.||.||.||.|||||
BL01646___ybc    442 GGCGTCGTCGGCGTCATCTCACCGTGGAATTTCCCTGTTGCCATCCCGAT    491

BSNT_00439___    492 TTGGAAAATGGCGCCGGC----ATTGGTATACGGCAATACCGTTGTCATC    537
                     |||||||||||||||.||    |||    ||.||.|||||.||||||||.
BL01646___ybc    492 TTGGAAAATGGCGCCTGCTCTTATT----TATGGAAATACGGTTGTCATT    537

BSNT_00439___    538 AAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTT    587
                     ||.|||||.||.|||||.||.||.||.|||...|||.|.||..|.|||||
BL01646___ybc    538 AAGCCGGCTACGGAAACCGCAGTCACCTGCCTTAAGGTTATATCGTGCTT    587

BSNT_00439___    588 TGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGG    637
                     |||.|||||.|||.|.||..||||.||..|||||..|||||||||.||||
BL01646___ybc    588 TGAAGAAGCAGGGATTCCCTCAGGCGTGGTCAATGCGGTGACAGGACCGG    637

BSNT_00439___    638 GTTCTGTTGTCGGTCAGGGGCTTGCTGAGCATGACGG-TGTAAACGCCGT    686
                     |.||....|.|||.||..|||||||.||||| ..||| |||.||||...|
BL01646___ybc    638 GATCATCGGCCGGCCAAAGGCTTGCCGAGCA-CCCGGATGTGAACGGAAT    686

BSNT_00439___    687 TACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGG--GCAAGCCGC    734
                     ||||||.||.||.||.||||||...||||||||||||||  |.|.|.||.
BL01646___ybc    687 TACGTTCACAGGATCGAATCAAACAGGAAAAATCATCGGCCGGACGGCGT    736

BSNT_00439___    735 TTTAGCGAGGGGAGCCAAGTACCAGCTTGAGATGGGCGGCAAAAACCCTG    784
                     ||.|..|||||  ||.||||||||||||||||||||||||||||||||.|
BL01646___ybc    737 TTGAAAGAGGG--GCGAAGTACCAGCTTGAGATGGGCGGCAAAAACCCGG    784

BSNT_00439___    785 TCATCGTAGCTGATGACGCTGACCTTGAAGCTGCGGCCGAAGCTGTCATA    834
                     |.||||||||.||||||||.||||||||...|||||..|||||.|||||.
BL01646___ybc    785 TGATCGTAGCGGATGACGCCGACCTTGATATTGCGGTTGAAGCGGTCATC    834

BSNT_00439___    835 ACGGGGGCCTTCCGTTCAACCGGCCAGAAATGCACCGCGACAAGCCGTGT    884
                     |..||.||.|||.|.||.||.|||||.||.||.||.|||||||||||.||
BL01646___ybc    835 AGCGGAGCGTTCAGGTCGACAGGCCAAAAGTGTACAGCGACAAGCCGCGT    884

BSNT_00439___    885 CATTGTAC--AAA--GCGAAATTTATGAGCGCTTTAAAGAAAAACTGCTC    930
                     |||.|| |  |||  |.|   |||||||.||.|||||||||||.|||||.
BL01646___ybc    885 CATCGT-CTTAAATGGTG---TTTATGACCGTTTTAAAGAAAAGCTGCTT    930

BSNT_00439___    931 CAGCGCACAAAAGATATTACAATCGGAGACAGCTTAAAAGAGGATGTCTG    980
                     ||.|..||||||||.|||||||||||.||||||||||||||.||||||||
BL01646___ybc    931 CAACAGACAAAAGAGATTACAATCGGCGACAGCTTAAAAGAAGATGTCTG    980

BSNT_00439___    981 GATGGGACCGATTGCCAGCAAGAATCAGCTTGATAACTGCCTGTCATACA   1030
                     ||||||.||||||||.|.|||..|.||||||||.|||||||||||.||.|
BL01646___ybc    981 GATGGGGCCGATTGCGAACAAACAGCAGCTTGACAACTGCCTGTCCTATA   1030

BSNT_00439___   1031 TTGAGAAAGGCAAACAGGAGGGGGCTTCCCT--TTTAATAGGAGGAGAAA   1078
                     |||..|||||.||.||.||.||.||...|||  |||  |.||.||.||.|
BL01646___ybc   1031 TTGCAAAAGGAAAGCAAGAAGGCGCGGACCTCATTT--TCGGCGGTGAGA   1078

BSNT_00439___   1079 AGCTGG-AGAACGGAAAGTATCAAAACGGCTATTATGTTCA-GCCTGCCA   1126
                     .||||| || |.|||||.||..|||||||||||||| .||| |||.||||
BL01646___ybc   1079 GGCTGGCAG-ATGGAAAATACGAAAACGGCTATTAT-ATCAGGCCGGCCA   1126

BSNT_00439___   1127 TCTTTGACAATGTGACATCTGAGATGACAATTGCCCAGGAGGAAATTTTT   1176
                     |.||||||||.||.||.||.|..|||||.||||||||.||.||||||||.
BL01646___ybc   1127 TTTTTGACAACGTCACTTCCGGCATGACGATTGCCCAAGAAGAAATTTTC   1176

BSNT_00439___   1177 GGTCCGGTGATCGCCTTGATCAAGGTGG----ACTCGATGGAAGAGGCGC   1222
                     ||.|||||.|||||.||.|||||||.||    |||.|| ||||   |||.
BL01646___ybc   1177 GGCCCGGTCATCGCTTTAATCAAGGCGGATACACTTGA-GGAA---GCGT   1222

BSNT_00439___   1223 TGAACATCGCCAATGATGTGAAGTTCGGATTAAGTGCATCCATCTTCACG   1272
                     ||.|.|..||.|||||.||.||.||.||..|.||.||.|||||.||.|||
BL01646___ybc   1223 TGGAGACGGCAAATGACGTCAAATTTGGCCTGAGCGCCTCCATTTTTACG   1272

BSNT_00439___   1273 GAAAACATCGGCCGAATGCTTTCTTTCATTGATGAAATCGATGCCGGGCT   1322
                     .|||||||..|.||.|||||.||.||||..|||||||||||.||.|||||
BL01646___ybc   1273 CAAAACATTAGGCGGATGCTGTCATTCACAGATGAAATCGAAGCGGGGCT   1322

BSNT_00439___   1323 GGTTCGGATCAATGCAGAAAGCGCAGGTGTTGAGCTGCAGGCGCCTTTTG   1372
                     ..||||..||||.||.||||||||.|||||.||.|||||||||||.||.|
BL01646___ybc   1323 CATTCGCGTCAACGCCGAAAGCGCCGGTGTCGAACTGCAGGCGCCATTCG   1372

BSNT_00439___   1373 GCGGCATGAAGCAGTCGAGCTCCCACTCCCGAGAACAGGGTGAGGCAGCG   1422
                     |.|||.|.||.||.||||||||.||.||.||.||||||||.||||||||.
BL01646___ybc   1373 GAGGCGTTAAACAATCGAGCTCGCATTCACGGGAACAGGGGGAGGCAGCC   1422

BSNT_00439___   1423 AAGGACTTTTTCACAGCGATCAAAACCGTTTTTGTGAAGCCGTAA   1467
                     ||.||.|||||.|||||..|.||||||||.|||||.||.||||||
BL01646___ybc   1423 AAAGAATTTTTTACAGCCGTGAAAACCGTATTTGTCAAACCGTAA   1467


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