Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00440 and BL01648
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00440___ycbE.1.5803.seq
# -bsequence dna-align/BL01648___gudP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00440___ycbE-BL01648___gudP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00440___ycbE-BL01648___gudP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00440___ycbE
# 2: BL01648___gudP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1416
# Identity: 1034/1416 (73.0%)
# Similarity: 1034/1416 (73.0%)
# Gaps: 87/1416 ( 6.1%)
# Score: 3758.5
#
#
#=======================================
BSNT_00440___ 1 ATGAAAAAAGACTTTGCGAATGTTACA-------CCG-----GCGGGCAA 38
||||||||| |||..|.|| ||| |||||.||
BL01648___gud 1 ATGAAAAAA---------AATCGTGCAGCCTCCCCCGATACCGCGGGGAA 41
BSNT_00440___ 39 AAAAACGTCCGTGCGCTGGTTCATCGTGTTTATGCTGTTTCTTGTGACCT 88
||.||..||.||.||||||||..||||||.||||||||||||.||.||.|
BL01648___gud 42 AAGAAGTTCTGTCCGCTGGTTTGTCGTGTCTATGCTGTTTCTCGTCACAT 91
BSNT_00440___ 89 CTATTAACTACGCGGATCGAGCGACGCTTTCCATCACCGGAGATTCCGTC 138
|.|||||.||.||.||.||.|||||.|||||.|||..|||.|||||.||.
BL01648___gud 92 CCATTAATTATGCCGACCGTGCGACACTTTCGATCGTCGGCGATTCTGTG 141
BSNT_00440___ 139 CAGCACGATTTGGGATTGGAC-----TCGGTCGCCATGGGATATGTCTTT 183
||||| ||.|.||||.| |||||.||.|||||.|||||||||
BL01648___gud 142 CAGCA-----TGAGCTTGGGCTGAGTTCGGTGGCGATGGGGTATGTCTTT 186
BSNT_00440___ 184 TCTGCCTTTGGCTGGGCCTATGTCATCGGACAGCTTCCGGGCGGCTGGCT 233
||.||.|||||||||||.|||||..||||.||..|.||.||.||||||||
BL01648___gud 187 TCCGCATTTGGCTGGGCGTATGTTGTCGGCCAAATCCCCGGAGGCTGGCT 236
BSNT_00440___ 234 GCTGGACCGTTTTGGTTCAAAGACTATCATTGCGTTAAGCATCTTTTTCT 283
|||.|||||||||||.||.||.|...||||.||....||||||||.||.|
BL01648___gud 237 GCTCGACCGTTTTGGGTCGAAAATCGTCATCGCCGCCAGCATCTTCTTTT 286
BSNT_00440___ 284 GGTCGTTTTTTACGCTGCTGCAAGGGGCGATTGGCTTTTTCTCCGCCGGC 333
||||.||.|||||.||..||||.||.|||.|||||||||||.||||.||.
BL01648___gud 287 GGTCATTGTTTACCCTTTTGCAGGGTGCGCTTGGCTTTTTCGCCGCGGGA 336
BSNT_00440___ 334 ACAGCGATTATCCTGCTGTTTGCACTGCGTTTTCTGGTTGGTTTATCAGA 383
||.||..|.|||||..|.|||||.||..|.|||||.||.|||.|.|||||
BL01648___gud 337 ACGGCCGTAATCCTTTTATTTGCGCTCAGATTTCTCGTCGGTCTGTCAGA 386
BSNT_00440___ 384 AGCGCCTTCATTTCCCGGAAACGGCAGAGTTGTTGCCTCATGGTTTCCAA 433
|||.||.||.||.|||||.||||||.|.||.||.||.||.||||||||||
BL01648___gud 387 AGCCCCGTCCTTCCCCGGCAACGGCCGGGTGGTGGCTTCCTGGTTTCCAA 436
BSNT_00440___ 434 GCTCCGAGCGCGGGACAGCTTCAGCCTTTTTTAATTCAGCACAATACTTC 483
|.||.||.|||||.||||||||.||..|.||.||.||.||.||.||||||
BL01648___gud 437 GTTCTGAACGCGGAACAGCTTCGGCGATCTTCAACTCGGCGCAGTACTTC 486
BSNT_00440___ 484 GCAATCGTCATTTTTTCTCCTTTAATGGGCTGGCTTACCCACTCTTTCGG 533
|||.|||||||||||||.||..|.|||||.|||||..|||||||||||.|
BL01648___gud 487 GCACTCGTCATTTTTTCACCGCTGATGGGGTGGCTCGCCCACTCTTTCAG 536
BSNT_00440___ 534 CTGGCATTCCGTCTTCGTTGTTATGGGTATTGC---GGGCATTCTTC--- 577
|||||||.|.||.||.||..||||||| ||| |||.| ||
BL01648___gud 537 CTGGCATACGGTTTTTGTCATTATGGG---TGCACTGGGGA----TCGCG 579
BSNT_00440___ 578 -TGGCTGTCATCTGGCTAAAAACGGTGTACGAACCGAAAAAACACCCAAA 626
||.|..||||.|||||.||||||.|.||||||||||||||||||||
BL01648___gud 580 ATGTCGTTCATTTGGCTGAAAACGATTTACGAACCGAAAAAACACCC--- 626
BSNT_00440___ 627 GGTTAATGAA----GCTGAGCTTGCGTACATCGAACAGGGCGGCGGACTG 672
|..|||.|| ||.||.||.||||||||||||.|.|||||||..||.
BL01648___gud 627 -GAGAATAAACGCCGCCGAACTGGCGTACATCGAAGAAGGCGGCGCGCTT 675
BSNT_00440___ 673 ATTTCCATGGATGACAGTAAAAGC------AAACAAGAGACAGAATCGAA 716
.|.||.||||||||..|.||.|.| |||.||||.|..||.|||.|
BL01648___gud 676 GTCTCGATGGATGAGGGAAAGAACGCGGAAAAAAAAGAAAAGGAGTCGCA 725
BSNT_00440___ 717 ATGGCCGTATATCAAACAGCTGTTAACGAA-CCGCATGCTGATTGGTGTG 765
||||||.|||||.||.|||||.|||| ||| |||.||||||.|.||.|||
BL01648___gud 726 ATGGCCTTATATTAAGCAGCTTTTAA-GAAGCCGGATGCTGCTCGGGGTG 774
BSNT_00440___ 766 TACATCGCGCAATACTGTATTACGACTCTCACCTATTTCTTTCTCACATG 815
||.|||||.||||||||.||.||.||.||.||||||||||||||.|||||
BL01648___gud 775 TATATCGCTCAATACTGCATCACAACGCTGACCTATTTCTTTCTGACATG 824
BSNT_00440___ 816 GTTTCCGGTATATTTGGTTCAGGCCCGCGGCATGTCTATTCTTGAAGCTG 865
|||||||||.|||.|.||||||||.|||||||||||.||.||||||||.|
BL01648___gud 825 GTTTCCGGTCTATCTTGTTCAGGCGCGCGGCATGTCGATCCTTGAAGCGG 874
BSNT_00440___ 866 GGTTTGTCGCTTCCCTGCCGGCGCTGTGCGGATTTGCCGGCGGCGTGCTT 915
|.||||||||.||.||.||.||..|.|||||||||...||.||..||||.
BL01648___gud 875 GTTTTGTCGCATCGCTTCCTGCAATCTGCGGATTTTTAGGAGGATTGCTG 924
BSNT_00440___ 916 GGGGGCATTGTGTCAGACATCTTGCTCAAAAAAGGCCGTTCACTGACCTT 965
||.||..|.|||||||||.||.|..|.|||||.|||.|.||..|.||..|
BL01648___gud 925 GGCGGGTTCGTGTCAGACTTCCTTTTGAAAAAGGGCTGCTCCATAACGGT 974
BSNT_00440___ 966 TGCAAGAAAAGTGCCAATCATTGCCGGCATGCTGCTGTCTTGCAGTATGA 1015
|||.||||||..|||.|||||...||||||||||.||||.|||...||||
BL01648___gud 975 TGCCAGAAAAACGCCGATCATCCTCGGCATGCTGATGTCCTGCTCAATGA 1024
BSNT_00440___ 1016 TTGTCTGCAACTACACAGATTCAGCATGGCTCGTCGTTATCATTATGTCG 1065
|..|.||||||||..|||||||..|.|||||.||||||..|||.||||||
BL01648___gud 1025 TCATATGCAACTATGCAGATTCGTCCTGGCTGGTCGTTTCCATCATGTCG 1074
BSNT_00440___ 1066 CTCGCGTTTTTCGGAAAAGGCTTCGGCGCACTGGGCTGGGCTGTCGTGTC 1115
||.||.||||||||||||||.||||||||.|||||||||||.||.|||||
BL01648___gud 1075 CTTGCCTTTTTCGGAAAAGGATTCGGCGCGCTGGGCTGGGCGGTTGTGTC 1124
BSNT_00440___ 1116 GGACACGTCTCCGAAAGAATGTGCAGGATTAAGCGGCGGTTTGTTCAACA 1165
.||.||.||.||.||.||.|||||.||.||.||||||||..|.|||||||
BL01648___gud 1125 AGATACCTCGCCAAAGGAGTGTGCCGGCTTGAGCGGCGGCATCTTCAACA 1174
BSNT_00440___ 1166 CTTTCGGCAATATTGCCTCGATTACAACACCGATTATTATCGGATACATT 1215
|.||.||.||.|||||.||.||.||.||.||.||.||.||||||||.||.
BL01648___gud 1175 CCTTTGGAAACATTGCGTCCATCACGACGCCCATCATCATCGGATATATC 1224
BSNT_00440___ 1216 GTTAATGCCACTGGATCTTTTAATGGCGCGCTTGTGTTTGTCGGCGCTAA 1265
||.|||||.||.||.||.|||||.||.|||||||||||||||||.||.||
BL01648___gud 1225 GTGAATGCGACAGGCTCATTTAACGGAGCGCTTGTGTTTGTCGGAGCCAA 1274
BSNT_00440___ 1266 CGCGATTGCGGCGATCCTAAGCTATTTGCTGCTGGTCGGGCCGATCAAAC 1315
|||||||||.|||.|..|||||||||||.|.||.||||||||||||||.|
BL01648___gud 1275 CGCGATTGCCGCGGTATTAAGCTATTTGTTTCTCGTCGGGCCGATCAAGC 1324
BSNT_00440___ 1316 GGGTCGTGTTAA----AGAAACAAGAACAAGACCCCG-----ATCA---- 1352
|..||| || ||| ||||..|||||||.| |.||
BL01648___gud 1325 GCATCG----AACTGCAGA---AAGAGAAAGACCCTGCGGACACCACTTT 1367
BSNT_00440___ 1353 ATCGTTGCCTGTCTAA 1368
|||..|| ||.
BL01648___gud 1368 ATCCATG--TGA---- 1377
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