Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00443 and BL01651

See Amino acid alignment / Visit BSNT_00443 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence dna-align/BSNT_00443___ycbH.1.5803.seq
#    -bsequence dna-align/BL01651___garD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00443___ycbH-BL01651___garD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00443___ycbH-BL01651___garD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00443___ycbH
# 2: BL01651___garD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1602
# Identity:    1124/1602 (70.2%)
# Similarity:  1124/1602 (70.2%)
# Gaps:         144/1602 ( 9.0%)
# Score: 3748.5
# 
#
#=======================================

BSNT_00443___      1 ----ATGGCGATGAACCTCAGGAAGAACCAAGCGCCCCTT-TACATCAAA     45
                         .||.|.||.||.||      |||.|     |||.|| |||||.||.
BL01651___gar      1 ATGCTTGTCAATCAAACT------GAAAC-----CCCGTTGTACATTAAG     39

BSNT_00443___     46 GTGCATGAAATAGATAACACCGCGATTATTGTAAATGATGGAGGACTGCC     95
                     |||.|.||||.|||.||..||||.||.||.|..||||..||.||||||||
BL01651___gar     40 GTGAACGAAAAAGACAATGCCGCAATCATCGCCAATGCCGGCGGACTGCC     89

BSNT_00443___     96 -AAAGGGCAC--TGTTTTCTCATGCGGGCTCGTA--CTTGAAGA--GGAT    138
                      .||||| ||  |||||.||  ||||||||  ||  ||..||||  ||| 
BL01651___gar     90 GCAAGGG-ACGGTGTTTCCT--TGCGGGCT--TAAGCTGCAAGAGCGGA-    133

BSNT_00443___    139 GTTCCTCAAGGCCATAAGGTGGCCCTCACCGATCTCAATCA-AGGGGACG    187
                      ||||||||||.|||||.|||||..|.||.||..|||  || ||||  ||
BL01651___gar    134 -TTCCTCAAGGGCATAAAGTGGCTTTAACAGACATCA--CACAGGG--CG    178

BSNT_00443___    188 AGATCGTG--------CGTTACGGAGAGGTGATCGGATTTGCTGATGAGA    229
                          |||        ||.|||||.||..|.|||||.|.|||.| |.|.|
BL01651___gar    179 -----GTGCCGTTATTCGCTACGGCGAAATTATCGGCTATGCCG-TCAAA    222

BSNT_00443___    230 -CGATC---AAACGCGGGAGCTGGA--TACGGGAAGCCCTCGTGAGA--A    271
                      |||||   |||.|||||   ||||  |.||.|..||       |.|  |
BL01651___gar    223 CCGATCGAAAAAGGCGGG---TGGATTTCCGAGTCGC-------ATATCA    262

BSNT_00443___    272 TG---CCCGCTCCTCCGGCGTTAGACGATCTTCCTCTCGCAAACAGGGTG    318
                     ||   ||.|...|||||.||.|.||.||.||.||..||||.||||..||.
BL01651___gar    263 TGCTTCCGGAAGCTCCGCCGCTCGATGAACTGCCCATCGCCAACAAAGTT    312

BSNT_00443___    319 CCGCAGCCGCG-GCCGCCTCTTGAAGGCTACACGTTTGAAGGATACCGAA    367
                     ||..|.|| || .||.|.||||||.||.||.||.||||||||||||||.|
BL01651___gar    313 CCAAAACC-CGCTCCCCTTCTTGAGGGGTATACATTTGAAGGATACCGGA    361

BSNT_00443___    368 ATGCGGATGGCAGTGCGGGGACAAAAAATATCCTCGGCATCACGACAAGT    417
                     |||..||.||.||.|..||.||.|.|||..|.||.|||||.|.||||||.
BL01651___gar    362 ATGAAGACGGGAGCGTCGGCACGAGAAACGTGCTTGGCATTATGACAAGC    411

BSNT_00443___    418 GTTCAATGTGTTGTTGGTGTTTTGGATTATGCAGTCAAACGAATAAAAGA    467
                     ||||||||.||.|..||.|||.|.|||||.|||||.||||||||.|||||
BL01651___gar    412 GTTCAATGCGTCGCAGGCGTTCTCGATTACGCAGTGAAACGAATTAAAGA    461

BSNT_00443___    468 AGAGCTGCTGCCGAAATACCCAAATGTTGATGACGTTGTGCCGCTGC---    514
                     .||.|||||.||.|||||.||.||.|||||.|     |||.||||||   
BL01651___gar    462 GGAACTGCTCCCAAAATATCCGAACGTTGACG-----GTGTCGCTGCATT    506

BSNT_00443___    515 --ATCATCAATACGGATGCGGCGTGGCGATCAATGCGCCCGACGCTGTCA    562
                       |||||||.|||||.||||||||||||||.||||||||.||.||....|
BL01651___gar    507 AAATCATCAGTACGGCTGCGGCGTGGCGATTAATGCGCCGGAAGCCAAAA    556

BSNT_00443___    563 TTCCGATCCGCACGATTCAAAATCTTGCGAAGCATCCGAACTTCGGCGGA    612
                     |.||||||||.||||||||||||.|.||.|.|||.||.||.||||||||.
BL01651___gar    557 TCCCGATCCGAACGATTCAAAATATCGCCAGGCACCCTAATTTCGGCGGT    606

BSNT_00443___    613 GAAGTAATGGTAATCGGATTGGGATGTGAAAAGCTCCTCCCG-----GAA    657
                     ||||..|||||.||||||.|.||.||.||.||||||||.|||     ||.
BL01651___gar    607 GAAGCGATGGTGATCGGACTCGGCTGCGAGAAGCTCCTTCCGACGAAGAT    656

BSNT_00443___    658 AGAATTGCCTCCGAAA----ATGATGATGACATTCTATCGCTCCAGGATC    703
                     |||      .|||.||    |.|.|||..|||||||.||.||.|||||.|
BL01651___gar    657 AGA------GCCGGAAGGAGACGCTGAAAACATTCTTTCACTGCAGGAAC    700

BSNT_00443___    704 ACCGAGGTTTTGCGGC-GATGATCCAATCCATTTTGGAAATGGCGGAGGA    752
                     ..|.|||.||| |.|| .|||||.|||||.|||.||||||||||.||.||
BL01651___gar    701 GGCAAGGGTTT-CAGCAAATGATACAATCGATTATGGAAATGGCCGAAGA    749

BSNT_00443___    753 ACGGTTAATCAGGCTGAACAGCAGAAC----CCGGGTGTCATGCCCTGTT    798
                     .||.||||..||||||||    .||||    .|||.||.||||.||.|.|
BL01651___gar    750 GCGCTTAAAAAGGCTGAA----TGAACGGAAGCGGATGACATGTCCCGCT    795

BSNT_00443___    799 TCGGATCTGGTTATCGGCCTGCAATGCGGCGGCAGTGATGCGTTTTCCGG    848
                     ||.||.|||||.||||||||.||.|||||.|||||.||.||.|||||.||
BL01651___gar    796 TCAGACCTGGTGATCGGCCTACAGTGCGGAGGCAGCGACGCCTTTTCAGG    845

BSNT_00443___    849 CGTGACGGCGAACCCTGCCGT-GGGGTACGCGGCTGATTTATTGGTTCGC    897
                     .|||||.||.||||||| ||| .||.||.|||||.||.|||.|.||.||.
BL01651___gar    846 AGTGACCGCAAACCCTG-CGTCCGGATATGCGGCCGACTTACTTGTCCGG    894

BSNT_00443___    898 GCAGGTGCAACGGTTTTGTTTTCTGAAGTGACAGAGGTGCGGGATGCCAT    947
                     |||||.||.||||||||.|||||.|||||.||.||.||.||.||||||.|
BL01651___gar    895 GCAGGGGCCACGGTTTTATTTTCGGAAGTCACCGAAGTCCGCGATGCCGT    944

BSNT_00443___    948 TCATTTATTAACGCCGCGGGCTGTCAGTGAAGAGGTCGGACAATCACTGA    997
                     ||||.|..||||.|||||.|||||||.||||||.|||||.|...|.||||
BL01651___gar    945 TCATCTCCTAACACCGCGCGCTGTCAATGAAGAAGTCGGCCGCGCCCTGA    994

BSNT_00443___    998 TCAAAGAGATGAAGTGGTATGACAGCTATCTCCGGCGGG---GAGACG--   1042
                     |....||.|||...|||||||||.|||||||      ||   |||.||  
BL01651___gar    995 TTCGGGAAATGGCTTGGTATGACCGCTATCT------GGAAAGAGGCGAA   1038

BSNT_00443___   1043 -CAGACCGAAGCGCAAACCCGTCACCAGGCAATAAAAAAGGCGGATTATC   1091
                      |||||||||||||.||.|||||.||.||.||.||||||||||||.|..|
BL01651___gar   1039 TCAGACCGAAGCGCCAATCCGTCGCCGGGAAACAAAAAAGGCGGACTGGC   1088

BSNT_00443___   1092 CAATGTGGTGGAAAAAGCGTTAGGCTCGGTAGCGAAATCAGGCACAAGCC   1141
                     .||.|||||.||.|||.||.|.||.|||.|.|||||.||.||.|..||||
BL01651___gar   1089 AAACGTGGTCGAGAAATCGCTCGGGTCGATCGCGAAGTCGGGAAGCAGCC   1138

BSNT_00443___   1142 CCATCTCCGGCGTGCTCG-GCCCTGGTGAAAGAGCAGAGCAAAAAGGCCT   1190
                     |.|||...|.|||.||.| |||| ||||||||.||.|..||.|||||.||
BL01651___gar   1139 CGATCAGTGCCGTACTTGCGCCC-GGTGAAAGGGCTGTACAGAAAGGACT   1187

BSNT_00443___   1191 GCTGTTCGCGGCGACACCGGCAAGCGATTTTGTGTGCGGCACCCTGCAGC   1240
                     ..|.||.|||||||||||.||||||||||||||.||||||||||||||..
BL01651___gar   1188 CATTTTTGCGGCGACACCTGCAAGCGATTTTGTATGCGGCACCCTGCAAT   1237

BSNT_00443___   1241 TGGCTGCGGGCATGAATCTGCAGGTGTTTACGACAGGGAGGGGAACACCA   1290
                     |||||.|.||||||.||.|||||||.|||||.||.||.||||||||.||.
BL01651___gar   1238 TGGCTTCTGGCATGCATTTGCAGGTATTTACAACCGGAAGGGGAACGCCG   1287

BSNT_00443___   1291 TATGGCC------TGGCTGCTGCACCGGTGCTGAAAGTATCGACGCGGCA   1334
                     ||.||||      |||||      |||||..|||||||..||||.|||||
BL01651___gar   1288 TACGGCCTTGAAATGGCT------CCGGTTTTGAAAGTGGCGACCCGGCA   1331

BSNT_00443___   1335 TTCCTTATCAGAGCATTGGGCTGATTTAATCGATATCAATGCCGGCCGAA   1384
                     .||.||||||||..|||||...||.||.|||||..||||||||||..|.|
BL01651___gar   1332 GTCATTATCAGAAGATTGGCACGACTTGATCGACGTCAATGCCGGAAGGA   1381

BSNT_00443___   1385 TCGCGACAGGAGAGGC--CAGTATCGAAGACGTAGGCTGGGAAATCTTCA   1432
                     ||||.|||||.||.||  ||  ||.||.||.||.|||||||||||||||.
BL01651___gar   1382 TCGCTACAGGCGAAGCTTCA--ATAGAGGAAGTCGGCTGGGAAATCTTCC   1429

BSNT_00443___   1433 GGACGATTTTGGATGTGGCAAGCGGCCGCAAACAAACGTGGGCTGACCGT   1482
                     |||||||..|.||.||.||||||||..|.|   ||||.|||||.||.|.|
BL01651___gar   1430 GGACGATACTTGACGTCGCAAGCGGAAGGA---AAACATGGGCGGAACAT   1476

BSNT_00443___   1483 TGGGGCCT-TCATAATGATTTGTGCTTGTTTAATCCTGCTCCAGTGACTT   1531
                     |||||.|| || .|||||.|||||.||.||.||.||.||.||.|||||||
BL01651___gar   1477 TGGGGACTCTC-CAATGACTTGTGTTTATTCAACCCAGCGCCTGTGACTT   1525

BSNT_00443___   1532 GA   1533
                     ||
BL01651___gar   1526 GA   1527


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