Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00365 and BL01658

See Amino acid alignment / Visit BSNT_00365 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:01
# Commandline: needle
#    -asequence dna-align/BSNT_00365___ybdO.1.5803.seq
#    -bsequence dna-align/BL01658___ybdO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00365___ybdO-BL01658___ybdO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00365___ybdO-BL01658___ybdO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00365___ybdO
# 2: BL01658___ybdO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1228
# Identity:     875/1228 (71.3%)
# Similarity:   875/1228 (71.3%)
# Gaps:          86/1228 ( 7.0%)
# Score: 3083.5
# 
#
#=======================================

BSNT_00365___      1 ATGCGTCTGAATCGGCAATTTATCCGCACTCAGCTGATGGCACAGAACAT     50
                     ||||||||.|||.|.||||..|||||.||.||||||||||..|||||.||
BL01658___ybd      1 ATGCGTCTCAATAGTCAATACATCCGTACACAGCTGATGGTCCAGAATAT     50

BSNT_00365___     51 ATTGAGCAAG-AATGCGCCTGCCAAACGGGAGAATGCGACTGAAAA----     95
                     ||||| .||| ||||||.|||            ||.|.|||..|||    
BL01658___ybd     51 ATTGA-AAAGAAATGCGGCTG------------ATACAACTTTAAAAAAT     87

BSNT_00365___     96 ------TCCAG------CGGCAGTTCTGGAAAAGGCATACAGCAGGCTTA    133
                           ||| |      |.||.|||..|.|.|||||   ||||||     
BL01658___ybd     88 GTCTCTTCC-GATATCACTGCCGTTGCGAAGAAGGC---CAGCAG-----    128

BSNT_00365___    134 AGTCACAATCTTCAA-CTGGGGGA--ATC-------------AATCAGTT    167
                                |||| |.|||.||  |||             |.|.||.|
BL01658___ybd    129 -----------TCAAGCAGGGAGAGCATCGAAAGAAAGTTTGAGTAAGCT    167

BSNT_00365___    168 CAATTATTCTAAAACCAGCGTGTCGGGAAACA--GCGGGGCGTTCA----    211
                     .||.||  ||.|||..|..||.|.|.|||.||  .|||.||.||||    
BL01658___ybd    168 GAACTA--CTCAAAGGACAGTATTGTGAATCATGCCGGAGCTTTCAGGCG    215

BSNT_00365___    212 -GCAAAGTGTATCAATCAGCGAATGATCGAACAGTGACAGACACAGGGGA    260
                      |||     ||..||.||||.|||||||||||.||.|||||.||||||.|
BL01658___ybd    216 GGCA-----TACGAAGCAGCAAATGATCGAACTGTCACAGATACAGGGAA    260

BSNT_00365___    261 AGAAACAGTGATTCAAT-CCCAAAACCACTATGAATCTGAGAGTGATATC    309
                     ||||||...|||| ||| |||||||||.|||||..||.||.|||||.|||
BL01658___ybd    261 AGAAACGAAGATT-AATGCCCAAAACCCCTATGTGTCAGAAAGTGACATC    309

BSNT_00365___    310 AGAATCAAAATACTAGATGAAAAATACAGCAGGATGAATGCGATTAATAA    359
                     ||.|..|||||..||||||||||||||||||..||.|||||.||.||.||
BL01658___ybd    310 AGGAAAAAAATCTTAGATGAAAAATACAGCAAAATAAATGCAATGAACAA    359

BSNT_00365___    360 AACAAAGTCTGATCCATTAGGCTATATTAAGGATAAGTACCAAAATTCAA    409
                     |||.||..|.||.||.||||||||.|||||||||||.|||.||||..|.|
BL01658___ybd    360 AACGAAACCCGACCCTTTAGGCTACATTAAGGATAAATACAAAAACCCCA    409

BSNT_00365___    410 AGTCTCCTTATTTCAGAAGTGATCTGTCAGCTGCAGAAAGACAGGCCGCT    459
                     |.||.|||||||||||||.|||..||||.||.||||||||||||||.||.
BL01658___ybd    410 ATTCCCCTTATTTCAGAAATGACTTGTCGGCAGCAGAAAGACAGGCTGCA    459

BSNT_00365___    460 TACGATAATGAAACAGAATGGTTATTCAAAGGGAAGGCGCAAAACTATAA    509
                     ||.||.||||||||.||.|||.|.||||||||.||||||||||.||||||
BL01658___ybd    460 TATGACAATGAAACTGAGTGGCTGTTCAAAGGAAAGGCGCAAAGCTATAA    509

BSNT_00365___    510 CCTTCAGGATGCTGTGTTTCGGAATGTCACATTTCATGGGGAAGTGGAAG    559
                     ..|.||||||||.|.||||||.|||||.||.|||.||||||||||.||..
BL01658___ybd    510 TATGCAGGATGCCGCGTTTCGAAATGTGACTTTTAATGGGGAAGTAGAGA    559

BSNT_00365___    560 CTGAGAATGAAAAGGTGTATCAGCGGGGACAGGTTAACCAGCAGCTGCAA    609
                     |.||||||||.||.||.||||||||..|.||.||.|||.|.|||||.|||
BL01658___ybd    560 CGGAGAATGAGAAAGTATATCAGCGCAGCCAAGTCAACAAACAGCTTCAA    609

BSNT_00365___    610 GTACTGTTGAATCGAAACCATATTCATATTCCAGAGGGGACAGAGCTGAC    659
                     |..|||.||.|||.|.|.||||||...|||||||.||...|.|.|||.||
BL01658___ybd    610 GCGCTGCTGGATCAATATCATATTGCCATTCCAGCGGATGCGGCGCTCAC    659

BSNT_00365___    660 GTTTACAATCACACCGATTGACTATCAGGTGCGGGTAAGCGGGTCAGACG    709
                     .|||||.||.|||||||||||.|||||.||...|||||||||..||||.|
BL01658___ybd    660 CTTTACGATTACACCGATTGATTATCAAGTAAAGGTAAGCGGAACAGATG    709

BSNT_00365___    710 ATCAGGATCTGATCAAGCAAATTGAGCAAGTGCTGCAATCTGGAGACAAC    759
                     ||.||.|.||.|||.|.||||||||.|||.|..|||||||.|||||.|||
BL01658___ybd    710 ATGAGCAACTCATCCATCAAATTGAACAAATATTGCAATCAGGAGAAAAC    759

BSNT_00365___    760 AGCAAAGAACTATTTTTGCACATCATGAAAAGCCAAAGCAGTGATTCAGC    809
                     ||||||.|..|||||.||||.||||||||||||...|||||.|||||.||
BL01658___ybd    760 AGCAAACAGTTATTTCTGCATATCATGAAAAGCTTGAGCAGCGATTCGGC    809

BSNT_00365___    810 ACAATTTTCCGAAGAGGCCTATCAAAAGTATCAGGCTGCTCGTGAGATGT    859
                     |||||.||||.||||.||..|.|||||.||||||.|.|.|||.|||||.|
BL01658___ybd    810 ACAATATTCCAAAGAAGCGCACCAAAAATATCAGACGGTTCGCGAGATAT    859

BSNT_00365___    860 ATGAAGTTACAGGCTACCATTTGAAGGATTTAGAAGTGATTGATGGGCGG    909
                     ||||.||.|||||.||.||..||||.|||||.||||||.|||||||.||.
BL01658___ybd    860 ATGAGGTGACAGGGTATCACCTGAAAGATTTGGAAGTGGTTGATGGCCGA    909

BSNT_00365___    910 TACGTCACGCCTGAGGGACGTGACTTAATGGATGTATATAAGGAAGAGCT    959
                     ||.||.||.|||...||.|||||.|||.|.||.||.|||||.||||||||
BL01658___ybd    910 TATGTAACACCTTCCGGCCGTGATTTATTAGAAGTGTATAAAGAAGAGCT    959

BSNT_00365___    960 TGAAAAAGATCCAGTGCAGAAACAAACGGCT--TCTTATGCTATATCTTA   1007
                     .||.||.|||||.||.|..||..||||||||  |||  .||.||..||.|
BL01658___ybd    960 GGAGAAGGATCCCGTCCTCAAGAAAACGGCTCATCT--CGCAATCGCTCA   1007

BSNT_00365___   1008 CTATCGTTCAGAGCTCAGTAAAATCGCGGAAGCCGGGTATAATGCCATTC   1057
                     .|||.|..|||||||.|..|...|.||||||||||..|||.||.|..|||
BL01658___ybd   1008 TTATGGAGCAGAGCTGAACAGGCTTGCGGAAGCCGAATATGATTCTGTTC   1057

BSNT_00365___   1058 CGGATTTCATCCTTTCAATTGATTACAGCAATGGATCTCTGAGAGATGTG   1107
                     |||||||||||.|.||.|||||.||||||||.||.||..||.|.|||...
BL01658___ybd   1058 CGGATTTCATCTTGTCTATTGACTACAGCAACGGGTCATTGCGGGATACA   1107

BSNT_00365___   1108 GGACAAAGCAAGAGCTATGGGACCGGAGATACCGGGTGGCTTGAAGCATT   1157
                     ||.||||..|||||||||||.|||||.|||||.|..|||||...||.|||
BL01658___ybd   1108 GGGCAAAAGAAGAGCTATGGAACCGGGGATACGGCTTGGCTAAGAGAATT   1157

BSNT_00365___   1158 AAAGCGTCAAACGGGTGTGAATTATTAG   1185
                     ||||||.|.|||||||||||||.|||||
BL01658___ybd   1158 AAAGCGCCGAACGGGTGTGAATGATTAG   1185


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