Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04881 and BL01677

See Amino acid alignment / Visit BSNT_04881 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:04
# Commandline: needle
#    -asequence dna-align/BSNT_04881.1.5803.seq
#    -bsequence dna-align/BL01677___yusQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04881-BL01677___yusQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04881-BL01677___yusQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04881
# 2: BL01677___yusQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 443
# Identity:     197/443 (44.5%)
# Similarity:   197/443 (44.5%)
# Gaps:         187/443 (42.2%)
# Score: 492.5
# 
#
#=======================================

BSNT_04881         0 --------------------------------------------------      0
                                                                       
BL01677___yus      1 ATGCCATTTGTCAGGATGGATCTTTTAAAAGGAAGATCAAAGGAAGAGCT     50

BSNT_04881         1 -------------------------------ATGATTGAAGAAATCAATG     19
                                                    ||||..||.|..|||.|||
BL01677___yus     51 TCGCCGGATCAGCAGATCAGTTCACCAGGCGATGACGGAGGCGATCGATG    100

BSNT_04881        20 TGCCGGAAGATGACTATTTTCAAGTCAT----TAGACAATATGAAAAAAG     65
                     |.||||||||.||.||||||||.|||||    .|| ||..||||..||  
BL01677___yus    101 TTCCGGAAGACGATTATTTTCAGGTCATCACCCAG-CACGATGAGGAA--    147

BSNT_04881        66 CGAATTTTTTTATGATCCATTTTATCTCCAAG----TCGAGCGTACTGAT    111
                      ||.||.||||..|||||    ||.||..|.|    ||.|.||.||..|.
BL01677___yus    148 -GAGTTCTTTTTCGATCC----TAGCTATATGAACATCAAACGGACGAAG    192

BSNT_04881       112 GAACTAATATACATTCATTTTACACTGAAACAGTCAAGAACAACTGAACA    161
                     ||..|.||.||.|||||..|.|||.|||||.||   ||    ||.||.| 
BL01677___yus    193 GATTTGATTTATATTCACATCACAATGAAAGAG---AG----ACCGATC-    234

BSNT_04881       162 GAAAAAA-----GCACTTTACCGCTCAATCGCGAGCCGGATTCATT-CCG    205
                     |||||||     ||.||.||||     |.||           |||| |.|
BL01677___yus    235 GAAAAAAAGCTGGCTCTGTACC-----AACG-----------CATTGCAG    268

BSNT_04881       206 AGC--TTGGTGTCAGAA-----------------AAGAAGATGTGTTTAT    236
                     |||  |||    ||.||                 ||||.||.||..|.||
BL01677___yus    269 AGCGTTTG----CAAAAAAACGCCGGCATCCGCCAAGAGGACGTCATGAT    314

BSNT_04881       237 CATGCTG--GCCG-------GAAATCAGGCTGAGGATTGGTCTTTCGGAA    277
                     |||  ||  ||||       ||||       |||.|.|||||.||.||.|
BL01677___yus    315 CAT--TGCAGCCGAAAACGTGAAA-------GAGAACTGGTCGTTTGGGA    355

BSNT_04881       278 ATGGAAGAGCCCAG-----ATGA-TTGAATAA-----------    303
                     ||||||.|||.|||     ||.| ||||  ||           
BL01677___yus    356 ATGGAACAGCACAGCTTGCATCAGTTGA--AAGGGAGCGTTGA    396


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